Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 98.7 2e-15
seq47 86.0 1e-11
>seq1973
Length=9094
Score = 98.7 bits (108), Expect = 2e-15
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| || || ||||| ||||| || || ||||||||||| | || ||| | |||||
Sbjct 5608 GAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATC 5549
Query 151952 TTCTAG--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008
|| || ||||| ||||| ||||| |||| | |||||||| | | |||||| |||||
Sbjct 5548 CTCGAGCTGCTTT--CCGGCAAAGATCAAGCGT-TGCTGGTCTGGGGGGATTCCCTCCTT 5492
Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068
|| || || || ||||| | |||| | |||| || |||||| || || || ||
Sbjct 5491 GTCCTGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGAT 5432
Query 152069 AGTTTTGCCCGTGA 152082
|| || || ||||
Sbjct 5431 GGTCTTACCGGTGA 5418
>seq47
Length=33200
Score = 86.0 bits (94), Expect = 1e-11
Identities = 134/190 (71%), Gaps = 4/190 (2%)
Strand=Plus/Minus
Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954
||| |||||||| || ||||| || ||||||||||| || | | || | || || ||
Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230
Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012
|| ||||| || |||||||| | | ||| || |||| | ||||| ||||| ||
Sbjct 24229 GAGTTGCTTT--CCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCC 24172
Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072
||||| || || ||| | || | | |||| ||| ||| || || || || || ||
Sbjct 24171 TGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTC 24112
Query 152073 TTGCCCGTGA 152082
||||||||||
Sbjct 24111 TTGCCCGTGA 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153676677325579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |