Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1973 98.7 2e-15 seq47 86.0 1e-11 >seq1973 Length=9094 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| || || ||||| ||||| || || ||||||||||| | || ||| | ||||| Sbjct 5608 GAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATC 5549 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGAT-AAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 || || ||||| ||||| ||||| |||| | |||||||| | | |||||| ||||| Sbjct 5548 CTCGAGCTGCTTT--CCGGCAAAGATCAAGCGT-TGCTGGTCTGGGGGGATTCCCTCCTT 5492 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || || || || ||||| | |||| | |||| || |||||| || || || || Sbjct 5491 GTCCTGGATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGAT 5432 Query 152069 AGTTTTGCCCGTGA 152082 || || || |||| Sbjct 5431 GGTCTTACCGGTGA 5418 >seq47 Length=33200 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/190 (71%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| |||||||| || ||||| || ||||||||||| || | | || | || || || Sbjct 24289 GACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCCTC 24230 Query 151955 TAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || ||||| || |||||||| | | ||| || |||| | ||||| ||||| || Sbjct 24229 GAGTTGCTTT--CCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCC 24172 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || || ||| | || | | |||| ||| ||| || || || || || || Sbjct 24171 TGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTC 24112 Query 152073 TTGCCCGTGA 152082 |||||||||| Sbjct 24111 TTGCCCGTGA 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153676677325579