Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_032255.1
Length=112536
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 111 1e-19
seq231 96.9 2e-15
seq47 86.0 5e-12
>seq1973
Length=9094
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| ||||| || |||||| ||||| ||||| |||| |||| ||| |||| ||
Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||| || || | ||||| ||||| | || | ||| ||||| |||
Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | | || ||||| | ||||| ||||| | || || |||||
Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937
Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| ||||||||||||||
Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187
||||| || | |||||||||||||| |||||||| ||| ||| || | || ||
Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286
Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247
|| ||||| ||||| || ||||| ||||| ||||| | || | ||| ||||| |||
Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226
Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307
||||| ||| | | | || ||||| | || || || |||| ||||| |||||
Sbjct 6225 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 6166
Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337
|| || || ||||| |||||||| |||||
Sbjct 6165 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 100 bits (110), Expect = 2e-16
Identities = 144/201 (72%), Gaps = 4/201 (2%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|||| |||||| || |||||| ||||| ||||| |||| |||| ||| |||| ||
Sbjct 5888 ACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 5829
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|| ||||| ||||||||||| | ||||| || || | || | || ||||| |||
Sbjct 5828 AGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 5769
Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306
|||||| ||| || ||| | ||||| || |||||| || || | || || ||||
Sbjct 5768 ATCTTCGACTTGACATTGT--CGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCT 5711
Query 44307 TTCCCGTGAGGGTCTTCACGA 44327
| || || | |||||| ||||
Sbjct 5710 TGCCAGTCAAGGTCTTGACGA 5690
Score = 89.7 bits (98), Expect = 4e-13
Identities = 132/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188
|| ||||| || || |||||| || ||||||||||| | || || | || ||
Sbjct 5604 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCG 5545
Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248
|||||||| |||||||||||||| || ||||| |||| || | || ||||| |||
Sbjct 5544 AGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 5485
Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308
||||| ||| | | |||||||||| | || || ||||| | || || |||||
Sbjct 5484 ATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTA 5425
Query 44309 CCCGTGA 44315
|| ||||
Sbjct 5424 CCGGTGA 5418
>seq231
Length=23011
Score = 96.9 bits (106), Expect = 2e-15
Identities = 135/185 (73%), Gaps = 6/185 (3%)
Strand=Plus/Plus
Query 44148 CCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206
|||||||||| || || || | | || || || | || || || ||||| || || |||
Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTG-CGTCCATCCTCGAGTTGCTTTCCAGCGAAG 15400
Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264
||||||||||| ||||| | || | || ||||| ||| ||||| ||| || ||
Sbjct 15401 ATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 15460
Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324
| | || ||||| | || || ||||| | ||||| ||||| |||||||||||||| |
Sbjct 15461 T--CGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGA 15518
Query 44325 CGAAG 44329
|||||
Sbjct 15519 CGAAG 15523
>seq47
Length=33200
Score = 86.0 bits (94), Expect = 5e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185
|| || || ||||| || |||||| ||||||||||| || | || || ||||
Sbjct 24291 AAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCC 24232
Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245
|| || ||||| || || |||||||||||||| ||||| | || | || ||||| |||
Sbjct 24231 TCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCC 24172
Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305
||||| ||| | | | |||||||| | || || ||||| | || || |||
Sbjct 24171 TGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTC 24112
Query 44306 TTTCCCGTGA 44315
|| |||||||
Sbjct 24111 TTGCCCGTGA 24102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 359947627403133
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |