Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1973 111 1e-19 seq231 96.9 2e-15 seq47 86.0 5e-12 >seq1973 Length=9094 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| ||||| || |||||| ||||| ||||| |||| |||| ||| |||| || Sbjct 6116 ACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 6057 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| || || | ||||| ||||| | || | ||| ||||| ||| Sbjct 6056 AGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTGG 5997 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | || ||||| | ||||| ||||| | || || ||||| Sbjct 5996 ATCTTTGACTTGACATTATCAATTGTGTCTGAAGATTCGACCTCGAGAGTGATGGTCTTG 5937 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||||||||| Sbjct 5936 CCGGTAAGAGTCTTGACGAAGATTTGCAT 5908 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| || | |||||||||||||| |||||||| ||| ||| || | || || Sbjct 6345 CACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTGAGGGTACGACCATCCTC 6286 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| || ||||| ||||| ||||| | || | ||| ||||| ||| Sbjct 6285 CAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGAATACCCTCCTTATCCTG 6226 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | | || ||||| | || || || |||| ||||| ||||| Sbjct 6225 GATCTTTGACTTGACATTATCAATTGTGTCCGAAGACTCAACTTCCAATGTAATAGTCTT 6166 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || || ||||| |||||||| ||||| Sbjct 6165 GCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136 Score = 100 bits (110), Expect = 2e-16 Identities = 144/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| |||||| || |||||| ||||| ||||| |||| |||| ||| |||| || Sbjct 5888 ACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAGAGTGTGCGGCCGTCCTCG 5829 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||||||||| | ||||| || || | || | || ||||| ||| Sbjct 5828 AGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGGATGCCCTCCTTGTCCTGA 5769 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | ||||| || |||||| || || | || || |||| Sbjct 5768 ATCTTCGACTTGACATTGT--CGATGGTATCACTGGATTCGACTTCGAGAGTGATGGTCT 5711 Query 44307 TTCCCGTGAGGGTCTTCACGA 44327 | || || | |||||| |||| Sbjct 5710 TGCCAGTCAAGGTCTTGACGA 5690 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| || ||||||||||| | || || | || || Sbjct 5604 ACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGATAGAGTACGACCATCCTCG 5545 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| |||||||||||||| || ||||| |||| || | || ||||| ||| Sbjct 5544 AGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 5485 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | |||||||||| | || || ||||| | || || ||||| Sbjct 5484 ATCTTGCTCTTGACGTTGTCTATGGTGTCCGACGACTCTACCTCGAGGGTGATGGTCTTA 5425 Query 44309 CCCGTGA 44315 || |||| Sbjct 5424 CCGGTGA 5418 >seq231 Length=23011 Score = 96.9 bits (106), Expect = 2e-15 Identities = 135/185 (73%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||| || || || | | || || || | || || || ||||| || || ||| Sbjct 15342 CCTTTTGGATATTATAGTCTGACAAGGTG-CGTCCATCCTCGAGTTGCTTTCCAGCGAAG 15400 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATG 44264 ||||||||||| ||||| | || | || ||||| ||| ||||| ||| || || Sbjct 15401 ATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTG 15460 Query 44265 TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCA 44324 | | || ||||| | || || ||||| | ||||| ||||| |||||||||||||| | Sbjct 15461 T--CGATAGTGTCCGAAGACTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTCTTGA 15518 Query 44325 CGAAG 44329 ||||| Sbjct 15519 CGAAG 15523 >seq47 Length=33200 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 44126 AACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCG 44185 || || || ||||| || |||||| ||||||||||| || | || || |||| Sbjct 24291 AAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGTCCGTCC 24232 Query 44186 TCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCC 44245 || || ||||| || || |||||||||||||| ||||| | || | || ||||| ||| Sbjct 24231 TCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGAATTCCCTCCTTGTCC 24172 Query 44246 GTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTC 44305 ||||| ||| | | | |||||||| | || || ||||| | || || ||| Sbjct 24171 TGAATCTTGGACTTAACATTATCGATGGTGTCCGAAGACTCAACCTCTAGGGTGATGGTC 24112 Query 44306 TTTCCCGTGA 44315 || ||||||| Sbjct 24111 TTGCCCGTGA 24102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359947627403133