Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10- 27] 9,749 sequences; 57,952,665 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1973 140 8e-28 seq47 122 2e-22 >seq1973 Length=9094 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||||||||| || || |||||||| || |||||||| Sbjct 5418 TCACCGGTAAGACCATCACCCTCGAGGTAGAGTCGTCGGACACCATAGACAACGTCAAGA 5477 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || |||||||| || ||||||||||| | ||||| ||||||| Sbjct 5478 GCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAACGCTTGATCTTTGCCGGAA 5537 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| ||||| | ||||| | ||||| ||| | || || || || || || | Sbjct 5538 AGCAGCTCGAGGATGGTCGTACTCTATCTGATTACAACATTCAGAAGGAGTCGACTCTCC 5597 Query 178123 ATCTTGt 178129 | || || Sbjct 5598 ACCTCGT 5604 Score = 111 bits (122), Expect = 4e-19 Identities = 146/201 (73%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 177931 TCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCG 177990 |||| || || | || || || || ||||| ||||| || ||| | || ||||||| Sbjct 5690 TCGTCAAGACCTTGACTGGCAAGACCATCACTCTCGAAGTCGAATCCAGTGATACCATCG 5749 Query 177991 AGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTA 178050 | || ||||| |||||||||||||| || || ||||| |||||||| || || |||| Sbjct 5750 ACAATGTCAAGTCGAAGATTCAGGACAAGGAGGGCATCCCACCGGACCAACAGCGCCTTA 5809 Query 178051 TCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAG 178110 |||| ||||| || || ||||| || || | || || |||| || || |||| || | Sbjct 5810 TCTTTGCCGGCAAGCAACTCGAGGACGGCCGCACACTCTCCGACTACAATATCCAGAAGG 5869 Query 178111 AATCAACACTGCATCTTGttt 178131 | || || || || |||| || Sbjct 5870 AGTCTACCCTTCA-CTTGGTT 5889 >seq47 Length=33200 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || || ||||||||||| || || || Sbjct 24102 TCACGGGCAAGACCATCACCCTAGAGGTTGAGTCTTCGGACACCATCGATAATGTTAAGT 24161 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||||| || ||||| || ||||| || || || | |||||||| |||| Sbjct 24162 CCAAGATTCAGGACAAGGAGGGAATTCCACCGGATCAACAGCGTTTGATCTTCGCTGGAA 24221 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | || ||||| || ||| | || ||| | || || ||| |||| || || || || || | Sbjct 24222 AGCAACTCGAGGACGGACGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 24281 Query 178123 ATCTTGtttt 178132 |||| || || Sbjct 24282 ATCTCGTCTT 24291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203580843064306