Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20salicellus_20[genbank_20GCA_5F001414355.1_202015-10-
27] 9,749 sequences; 57,952,665 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1973 129 5e-25
seq47 113 4e-20
>seq1973
Length=9094
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | ||||| ||||| ||||||||||| |||||||| |||||| |
Sbjct 6362 CCTCCACGAAGGCGAAGCACCAAATGCAAAGTGCTCTCCTTTTGAATGTTGTAGTCGCTG 6303
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || | || || | |||||||||||||| |||| |||||||| |||| |||
Sbjct 6302 AGGGTACGACCATCCTCCAATTGCTTGCCGGCGAAAATCAATCGCTGTTGATCCGGTGGA 6243
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| ||| ||| | | | | | ||||| ||||| ||
Sbjct 6242 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATTGTGTCCGAAGACTCAAC 6184
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| || || || || || ||||| ||||| ||||| ||||||||
Sbjct 6183 TTCCAATGTAATAGTCTTGCCGGTCAGAGTCTTAACGAAGATCTGCAT 6136
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| ||| || || ||||||||| || || |||||||||
Sbjct 6134 CCACCACGGAGACGAAGGACCAAATGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 6075
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| |||||||||||||| || || |||||||| |||| |||
Sbjct 6074 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAAATGAGTCGCTGTTGATCCGGTGGA 6015
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCA-ACGACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| ||| ||| ||| ||| | | | | | ||||| || || ||
Sbjct 6014 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCA-ATTGTGTCTGAAGATTCGAC 5956
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| || |||||
Sbjct 5955 CTCGAGAGTGATGGTCTTGCCGGTAAGAGTCTTGACGAAGATTTGCAT 5908
Score = 114 bits (126), Expect = 1e-20
Identities = 160/220 (73%), Gaps = 6/220 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| || || |||||||||
Sbjct 5906 CCACCACGGAGACGGAGAACCAAGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGGAG 5847
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||| ||||||||||| || || |||||||||||||||| ||
Sbjct 5846 AGTGTGCGGCCGTCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGCTGTTGGTCCGGTGGG 5787
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || |||||||||| ||| | || | ||| || | || | || || || || ||
Sbjct 5786 ATGCCCTCCTTGTCC-TGAATCTTCGACTTGACATTGTCG--ATGGTATCACTGGATTCG 5730
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|| || | || || || || || |||| ||||| ||||
Sbjct 5729 ACTTCGAGAGTGATGGTCTTGCCAGTCAAGGTCTTGACGA 5690
Score = 95.1 bits (104), Expect = 1e-14
Identities = 145/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | || || || || || ||||||||||||||| || || ||
Sbjct 5622 CCGCCACGAAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAATCAGAT 5563
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| ||||| || |||| ||| || ||||| | |||
Sbjct 5562 AGAGTACGACCATCCTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGCTGGTCTGGGGGG 5503
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| |||||| ||
Sbjct 5502 ATTCCCTCCTTGTCCTGGATCTTGCTCTT-GACGTTGTCTATGGTGTCCGACGACTCTAC 5444
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || ||||| ||
Sbjct 5443 CTCGAGGGTGATGGTCTTACCGGT 5420
>seq47
Length=33200
Score = 113 bits (124), Expect = 4e-20
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || ||||||||||| || ||||| || || ||||||||| ||||| ||||| ||
Sbjct 24306 CCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 24247
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| ||||| ||||| || ||||| |||| |||||||| |||| |||
Sbjct 24246 AGGGTACGTCCGTCCTCGAGTTGCTTTCCAGCGAAGATCAAACGCTGTTGATCCGGTGGA 24187
Query 41756 ACGCTCTCCTTGTCC 41770
| | ||||||||||
Sbjct 24186 ATTCCCTCCTTGTCC 24172
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462247662478800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |