Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2036 86.0 6e-12 >seq2036 Length=314316 Score = 86.0 bits (94), Expect = 6e-12 Identities = 195/293 (67%), Gaps = 3/293 (1%) Strand=Plus/Plus Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525 || || ||||| |||||||| || | ||| | || ||||| |||||||| || Sbjct 236221 TCCATAATATAAGTATCAATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 236280 Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585 || || || || |||||| |||| ||||| | ||||| ||||| | || || || Sbjct 236281 ATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGAACTTCACTGCTGAAGCGCTCG 236340 Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645 ||||||||||| || || ||||| ||||| || || || | | ||| ||| Sbjct 236341 AGGAGGTTCTCATTGACAATTCCGTCGGAGGCAGCGAAGAAAGCAAGGACGTGGGAGATG 236400 Query 16646 AAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTGGATATATCC 16702 || || ||||||| | || | | ||| || | | ||||||||| | ||| Sbjct 236401 AAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCTTTGGAAAGATCA 236460 Query 16703 ACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755 | ||||| | ||||| || |||| | ||||| || ||||||| ||| || Sbjct 236461 ATCTCTTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 236513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511397836566120