Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2036 86.0 6e-12
>seq2036
Length=314316
Score = 86.0 bits (94), Expect = 6e-12
Identities = 195/293 (67%), Gaps = 3/293 (1%)
Strand=Plus/Plus
Query 16466 TCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCT 16525
|| || ||||| |||||||| || | ||| | || ||||| |||||||| ||
Sbjct 236221 TCCATAATATAAGTATCAATGAGGAGGGAGTATGTCTCAGAGTGGATGTTCTCCATCATG 236280
Query 16526 ATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCC 16585
|| || || || |||||| |||| ||||| | ||||| ||||| | || || ||
Sbjct 236281 ATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGATTTGAACTTCACTGCTGAAGCGCTCG 236340
Query 16586 GCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATG 16645
||||||||||| || || ||||| ||||| || || || | | ||| |||
Sbjct 236341 AGGAGGTTCTCATTGACAATTCCGTCGGAGGCAGCGAAGAAAGCAAGGACGTGGGAGATG 236400
Query 16646 AAATATTTTTCGTCAGATGTAAG---AATATGCCAATCTTTTAAATCTTTGGATATATCC 16702
|| || ||||||| | || | | ||| || | | ||||||||| | |||
Sbjct 236401 AAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCCAGTCGTGGAGATCTTTGGAAAGATCA 236460
Query 16703 ACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAAT 16755
| ||||| | ||||| || |||| | ||||| || ||||||| ||| ||
Sbjct 236461 ATCTCTTCGGCAGTCCAGAAAGAAGCCTCGGCCTTCTTGTACATTTGCCAGAT 236513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511397836566120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |