Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 239 5e-58
seq2036 134 2e-26
>seq2371
Length=131994
Score = 239 bits (264), Expect = 5e-58
Identities = 1318/2074 (64%), Gaps = 46/2074 (2%)
Strand=Plus/Minus
Query 52798 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 52856
|||| ||| |||||| || ||||| || || || | | ||||| |||||||||||||
Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086
Query 52857 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCG 52916
| || || ||||| | |||| || ||||||||||| || | || | |
Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026
Query 52917 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 52976
|||| || ||||| ||||| |||||| |||||| ||||| || || | ||| ||||
Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966
Query 52977 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 53036
|||| | | ||| || ||||| |||||||||| ||| || |||| ||| ||||
Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906
Query 53037 CTTCTGGAAGGTTTGTA---TTCTGAATAGATCCACCATCTACCATAATCCTATTCTTGA 53093
| |||| | ||||| | || ||||| |||||||| || | || || | || || |
Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846
Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153
| | ||| ||| | | | || | | | | || || ||||| || ||||
Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786
Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213
| || ||||||| | || | |||| ||| || || ||| || || || | |||
Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726
Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273
| || ||| | ||||||| || ||||| |||||||| || || | ||||| |
Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666
Query 53274 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCG 53330
| | | ||| ||||| | || | | |||| || | |||||| |||||||||||
Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCG 28609
Query 53331 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 53390
||| ||| ||| || || || ||| || ||| |
Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549
Query 53391 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 53450
| || || |||| || | ||| || | || || || ||| ||| |
Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGT 28489
Query 53451 AAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAA 53509
|||||||||||||||| | | || || | |||| || || || || |||||| |
Sbjct 28488 AAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGA 28430
Query 53510 TTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
||||| || ||| || || || | ||||| ||||||| | | |||||||| || |
Sbjct 28429 CG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372
Query 53568 TCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 53626
||| | |||| || || || | ||| || || || ||||| ||||| || ||
Sbjct 28371 GGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTC 28313
Query 53627 AGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATC 53685
| ||| |||| | |||| | || || | || || | || ||| || || | ||
Sbjct 28312 AAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTC 28253
Query 53686 TATTA--CAA-ACATGTTC--AATGCAATAGATGCCAGATTACAAACGGCTACCTCATTA 53740
| | ||| | ||||| | || | ||||||| || ||||| || ||||||| |
Sbjct 28252 TTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCA 28193
Query 53741 GCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799
| | | || |||| | || ||||| || | || | |||||| || | |||
Sbjct 28192 GG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134
Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859
| ||| || |||||| ||| || |||||||| ||||| ||||| || | ||||| ||
Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074
Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919
| || | || | || | | ||| | | ||||| || | ||| |
Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGCC 28017
Query 53920 CTTTTC-TCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTC 53976
||| | || |||||| ||||| || || ||||| || | || | | |
Sbjct 28016 CTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGC 27957
Query 53977 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 54036
||| |||||||| |||| || |||||||| | ||| || || | | || || ||
Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTT 27897
Query 54037 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGT 54095
||| |||||||| |||||||| || || || ||| ||||| | || | | ||||| |
Sbjct 27896 CATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCCT 27838
Query 54096 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 54155
|||| |||||| || ||||||||| | | || ||| | ||||| || || | ||
Sbjct 27837 TTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGT 27778
Query 54156 ATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 54215
| |||| | | | ||||| || ||||| || || ||||| | |||| ||||||||| |
Sbjct 27777 AGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGT 27718
Query 54216 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 54275
| |||| | | ||| |||| || || ||||| || || || |||| || ||
Sbjct 27717 TGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAG 27658
Query 54276 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCTGCCATTTTAGAGAT 54333
||| |||| || || | || |||| | || || || ||||| | || || ||
Sbjct 27657 CACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGAAAT 27600
Query 54334 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 54393
| || || || || || || ||||| || || || || || ||| |||||| |
Sbjct 27599 CATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGAT 27540
Query 54394 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 54452
|| || || ||| | ||| || | | || || ||| ||| | || || || |
Sbjct 27539 GAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGG 27481
Query 54453 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCC 54512
|||| || || | || || | | ||||| || ||||| || | || ||||||
Sbjct 27480 CGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCT 27421
Query 54513 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 54572
|| ||||| || ||||||||||| | ||| || || || | ||| |||||||
Sbjct 27420 CGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGC 27361
Query 54573 TGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 54632
| | || | || ||| || | || || |||||||| || | ||| ||
Sbjct 27360 CATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAA 27301
Query 54633 AGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-C 54691
| || || ||||| | || | |||||||| | ||| | || | || |||
Sbjct 27300 AATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAATCGT 27241
Query 54692 ATGGTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAA 54750
||| | | ||| || || || || ||| |||| ||| |||||||| | |
Sbjct 27240 ATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATGGTA 27183
Query 54751 TAAATCCTTCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGG 54809
||| || || || | | | ||| | || || |||| ||||| || || || || |
Sbjct 27182 TAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGACTG 27124
Query 54810 CTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843
| ||||| || || || ||||||||||| |||||
Sbjct 27123 CAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090
>seq2036
Length=314316
Score = 134 bits (148), Expect = 2e-26
Identities = 341/515 (66%), Gaps = 9/515 (2%)
Strand=Plus/Plus
Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903
|||||||| ||| | ||||| || ||||| || || || || || | | || || ||
Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671
Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963
|||||||| ||| |||| |||| ||| || || | ||| | | | || | |||||
Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAAC-CTTCTCATTGCCGAG--AGAAAGG 235728
Query 23964 AAT---CTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATA 24020
| | ||| ||||||||||| || ||| ||||||| | |||||| || | |
Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788
Query 24021 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 24080
|| ||||||||| |||| | || ||||| ||||| ||| || || || ||
Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848
Query 24081 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 24140
| | | |||| | | | || || ||| | || || || | | ||||||
Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908
Query 24141 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 24200
|| ||| ||| |||||||| || | || || |||||||| || || || || | |
Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968
Query 24201 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 24260
|| ||||||||||| || | ||| || ||||| || || || ||| ||||| || ||
Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028
Query 24261 TCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCAC 24317
|| || || |||||||||| ||| | || || | | | |||| || |||||
Sbjct 236029 TCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCAT 236088
Query 24318 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 24352
||||||||| |||||||| || | |||||
Sbjct 236089 CGGACAGCCCAATCAGCCTTCTTCTTAATGCAAGG 236123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593702370841680
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