Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2036 131 2e-25 seq778 102 8e-17 seq2459 91.5 2e-13 >seq2036 Length=314316 Score = 131 bits (144), Expect = 2e-25 Identities = 204/286 (71%), Gaps = 7/286 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||| ||| | || || Sbjct 236513 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAAGAGATTGATCTT 236454 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGC---TTGAACGACAACGAGCGCCATTTCATCAA 116751 ||||| || | | | ||||||| | | | ||||| |||| ||| | |||||| Sbjct 236453 TCCAAAGATCTCCA-CGACTGGAACAACAAGCTCAACGATGACGAACGCTACTTCATCTC 236395 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||||| || || || ||||| ||| |||||| || ||||| ||||| || ||||||| Sbjct 236394 CCACGTCCTTGCTTTCTTCGCTGCCTCCGACGGAATTGTCAATGAGAACCTCCTCGAGCG 236335 Query 116812 TTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 ||| ||| || || || | | ||||| || | ||||||||| || || ||| | Sbjct 236334 CTTC-AGCAGTGAAGTTCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 236276 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 |||||||| | ||||| || | || || |||||| || || || Sbjct 236275 TGGAGAACATCCACTCTGAGACATACTCCCTCCTCATTGATACTTA 236230 >seq778 Length=242110 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAG 40770 |||| || || ||||||||| |||| || || | | |||| | | |||| ||||| Sbjct 98847 TCACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACG-TCAAG 98905 Query 40771 GAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGC 40830 || |||| ||||| |||||||| ||| | ||||| ||||| || |||| || || Sbjct 98906 AGCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGA 98965 Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 || ||||| || || | |||||||| ||| |||||||||||||||||| | || || Sbjct 98966 AAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCTC 99025 Query 40891 CATCTAGT 40898 || || || Sbjct 99026 CACCTCGT 99033 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || | || || || ||||||||| |||| || || | |||| | | | Sbjct 99119 TCGTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCG 99178 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| |||| || |||| ||||| ||||| ||||| | ||||| || || || Sbjct 99179 ACAACG-TCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTT 99237 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || ||||| ||||| || |||| ||||| || ||| ||||| ||||||||| Sbjct 99238 ATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAG 99297 Query 40879 GAGGCCACGCTGCA 40892 || |||| ||||| Sbjct 99298 GAATCCACTCTGCA 99311 >seq2459 Length=125150 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 40712 TCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGG 40771 |||||||||| ||||||||| | || || || || | |||| | | | | ||||| Sbjct 17383 TCACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGT 17324 Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || || | ||||| ||||| || || ||||||| || || | |||| || || | Sbjct 17323 CCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAA 17264 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | || || || || | || ||||| ||||||||||||||||||||| | || || | Sbjct 17263 AGCAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTC 17204 Query 40892 ATCTAGTGTTGCG 40904 |||| || || || Sbjct 17203 ATCTCGTCTTACG 17191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515202513338160