Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq778 95.1 1e-14
>seq778
Length=242110
Score = 95.1 bits (104), Expect = 1e-14
Identities = 129/180 (72%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594
||||| || ||||| || || |||||||||||| | ||||| ||||||||||||
Sbjct 99028 GTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTG 98969
Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654
||||| || |||| || || || || || || || |||||||||||||| ||| ||
Sbjct 98968 CTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTT 98909
Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714
|| || | |||| ||||||| ||| ||||||| ||| | || || |||||
Sbjct 98908 GCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 98849
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||| ||| | || ||| |||||||||||||||||||| | || || ||||||
Sbjct 99774 CACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTC 99715
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
| ||| || || ||| |||| | ||||| ||||| || || || |||||||| ||
Sbjct 99714 CAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTG 99655
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| ||| || || | || | ||||||| ||| || || | || | || ||
Sbjct 99654 GATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTT 99595
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| ||| || ||||| ||||||||
Sbjct 99594 GCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || || || || || || ||||||||| | ||||| |||||
Sbjct 99317 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCA 99258
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| || ||||| |||| || ||||| || || || || || ||||||||||| |
Sbjct 99257 AGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGA 99198
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || ||| || | |||| ||| || | ||| ||||||| ||| | || ||
Sbjct 99197 ATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 99138
Query 118710 CCGGTCAGAGTTTTTAC 118726
|| |||| ||| || ||
Sbjct 99137 CCAGTCAAAGTCTTGAC 99121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433816700584972
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |