Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq778 116 3e-21 seq2459 82.4 6e-11 >seq778 Length=242110 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||||| ||||||||||| ||||||||||| ||| | || ||| | || ||| Sbjct 99773 ACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCC 99714 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | || || || ||||| ||||| |||||||| || || || | ||||||||| ||| Sbjct 99713 AACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGG 99654 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | ||||| | ||| || || | || || |||||| Sbjct 99653 ATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTG 99594 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| |||||||| ||||| Sbjct 99593 CCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || |||||||| || ||||| |||||| | || || | || || Sbjct 99545 ACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCA 99486 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| || | |||||||||||||| || | ||||||||| ||| | Sbjct 99485 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGA 99426 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | || ||||||| || || ||||| Sbjct 99425 ATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTT 99366 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || ||||||||||| Sbjct 99365 CCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| ||| |||||||| || ||||| ||| ||| |||| |||| || Sbjct 99317 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCA 99258 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||||||||| || || | ||||||||||||| | Sbjct 99257 AGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGA 99198 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | || | ||||||||| | ||| || ||||| Sbjct 99197 ATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTA 99138 Query 45308 CCCGTCAGAGTCTTCAC 45324 || |||| |||||| || Sbjct 99137 CCAGTCAAAGTCTTGAC 99121 >seq2459 Length=125150 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || || ||||| ||||| || || Sbjct 17214 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAA 17273 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||| ||||||||||| || || | |||||||||||| || || ||| || Sbjct 17274 GATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATT 17333 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | | | ||||| ||| ||||| | ||| || ||||||||||| Sbjct 17334 GTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCCGT 17381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395062724389411