Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 304 1e-77
seq778 86.0 6e-12
>seq2371
Length=131994
Score = 304 bits (336), Expect = 1e-77
Identities = 640/948 (68%), Gaps = 5/948 (1%)
Strand=Plus/Minus
Query 23031 CAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGA 23089
|||| ||||| || || ||||| || || || ||| || |||||||| ||||| |
Sbjct 28217 CAAG-TTGCAAACAGCAACCTCATCAGGTGCACA-GTATTCGACAATTTCAGTACACAAG 28160
Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149
||| | || || || | ||| | |||||||| ||||| ||||| | |||||||
Sbjct 28159 TTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 28100
Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209
|| |||||| | || | || |||||| || | ||||| ||| | ||| | |
Sbjct 28099 TAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTT 28040
Query 23210 TGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268
|| || | | | || || ||| ||| || |||||| || | |||||| || ||
Sbjct 28039 TGGGCCTTGATGC-TCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTC 27981
Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328
|||||| ||||||| |||||||| || || | | | || ||||| | ||||
Sbjct 27980 GAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCA 27921
Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388
|| |||||||| || |||| || ||||| || ||||| || |||||||| ||
Sbjct 27920 GTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAG 27861
Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448
|| ||||| || |||||||| || ||| ||||||| | || | || || || ||
Sbjct 27860 ATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAAC 27801
Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508
|| || ||||| ||||||||||| | ||| || || || |||| ||| || || || ||
Sbjct 27800 ATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTG 27741
Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568
||| || || || || ||||||||| | || | ||||| || |||| ||||||||
Sbjct 27740 ATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTT 27681
Query 23569 GCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTAT 23628
||| | || || | | ||| | || || | ||||||| | || || ||
Sbjct 27680 TCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGAT 27621
Query 23629 GCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688
|| || | || || ||||| || || |||| |||||||||||| || || ||
Sbjct 27620 ACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAAT 27561
Query 23689 GCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGC 23748
||||||||| || | ||| | ||| || ||||| | ||| || | || ||| | ||
Sbjct 27560 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGC 27501
Query 23749 CGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTC 23808
| || ||||| || |||||| || ||||| | ||||| | ||||| || ||
Sbjct 27500 AGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTC 27441
Query 23809 GATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTG 23868
|||||| || ||||| ||||| |||||||| |||| ||||| ||||| ||||| | |||
Sbjct 27440 GATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTG 27381
Query 23869 AGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAA 23928
|| | ||| | ||| | | || |||||||| || | | || || ||
Sbjct 27380 TGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAA 27321
Query 23929 TCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976
||||| || | |||||||| ||||| |||| || ||||| || ||
Sbjct 27320 ACCAAAGTATTGGTAGTTAAAATCACGGTCGTAGACGATGGCGGAGTT 27273
>seq778
Length=242110
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || |||||| |||| ||||| || ||||| | || ||||| | ||
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| || ||| | ||| ||||| || | || || || ||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGATCA 99683
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
||||| | || ||||| ||||| |||||||| || | || | |||||||| ||
Sbjct 99684 ACAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAA 99743
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405
||||||||| || ||| | || ||||| |||
Sbjct 99744 CATTCAAAAGGAGAGCACTTTGCACCTGGTGCTT 99777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445751962740720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |