Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2371 304 1e-77 seq778 86.0 6e-12 >seq2371 Length=131994 Score = 304 bits (336), Expect = 1e-77 Identities = 640/948 (68%), Gaps = 5/948 (1%) Strand=Plus/Minus Query 23031 CAAGATTGCATACGGCCACCTCGTCTT-TGGACGTGTACTCTACAATTTCGGTACATAGA 23089 |||| ||||| || || ||||| || || || ||| || |||||||| ||||| | Sbjct 28217 CAAG-TTGCAAACAGCAACCTCATCAGGTGCACA-GTATTCGACAATTTCAGTACACAAG 28160 Query 23090 TTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTG 23149 ||| | || || || | ||| | |||||||| ||||| ||||| | ||||||| Sbjct 28159 TTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTG 28100 Query 23150 TAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTC 23209 || |||||| | || | || |||||| || | ||||| ||| | ||| | | Sbjct 28099 TAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTT 28040 Query 23210 TGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGCGTC 23268 || || | | | || || ||| ||| || |||||| || | |||||| || || Sbjct 28039 TGGGCCTTGATGC-TCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTC 27981 Query 23269 AAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCA 23328 |||||| ||||||| |||||||| || || | | | || ||||| | |||| Sbjct 27980 GAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCA 27921 Query 23329 CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAG 23388 || |||||||| || |||| || ||||| || ||||| || |||||||| || Sbjct 27920 GTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAG 27861 Query 23389 TTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACAC 23448 || ||||| || |||||||| || ||| ||||||| | || | || || || || Sbjct 27860 ATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAAC 27801 Query 23449 GTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTG 23508 || || ||||| ||||||||||| | ||| || || || |||| ||| || || || || Sbjct 27800 ATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTG 27741 Query 23509 ATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGC 23568 ||| || || || || ||||||||| | || | ||||| || |||| |||||||| Sbjct 27740 ATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTT 27681 Query 23569 GCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTAT 23628 ||| | || || | | ||| | || || | ||||||| | || || || Sbjct 27680 TCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGAT 27621 Query 23629 GCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGAT 23688 || || | || || ||||| || || |||| |||||||||||| || || || Sbjct 27620 ACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAAT 27561 Query 23689 GCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGC 23748 ||||||||| || | ||| | ||| || ||||| | ||| || | || ||| | || Sbjct 27560 GCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGC 27501 Query 23749 CGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTC 23808 | || ||||| || |||||| || ||||| | ||||| | ||||| || || Sbjct 27500 AGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTC 27441 Query 23809 GATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTG 23868 |||||| || ||||| ||||| |||||||| |||| ||||| ||||| ||||| | ||| Sbjct 27440 GATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTG 27381 Query 23869 AGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAA 23928 || | ||| | ||| | | || |||||||| || | | || || || Sbjct 27380 TGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAA 27321 Query 23929 TCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||||| || | |||||||| ||||| |||| || ||||| || || Sbjct 27320 ACCAAAGTATTGGTAGTTAAAATCACGGTCGTAGACGATGGCGGAGTT 27273 >seq778 Length=242110 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| || ||||| | || ||||| | || Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||| ||||| || | || || || || Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGA-TCCAGGATAAGGAGGGTATTCCACCAGATCA 99683 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| | || ||||| ||||| |||||||| || | || | |||||||| || Sbjct 99684 ACAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAA 99743 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || ||| | || ||||| ||| Sbjct 99744 CATTCAAAAGGAGAGCACTTTGCACCTGGTGCTT 99777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445751962740720