Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2371 262 5e-65 seq2036 111 2e-19 >seq2371 Length=131994 Score = 262 bits (290), Expect = 5e-65 Identities = 1152/1797 (64%), Gaps = 56/1797 (3%) Strand=Plus/Minus Query 62036 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 |||| ||| |||||| || ||||| || || || | | ||||| ||||||||||||| Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 | || || ||||| | |||| || ||||||||||| || | || | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 |||| || ||||| ||||| |||||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | | ||| || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 62275 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 | |||| | ||||| | || |||||||||||||| || | || || | || || | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | | ||| ||| | | | || | | | | || || || || || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||| ||||||| | || | |||| ||| || || ||| || || || | ||| Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || ||| | ||||||| || ||||| |||||||| || || | ||||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 62512 TTCTAAGACCGTATGTTCTG--ATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCG 62568 | | | ||| ||||| | || | | |||| || | |||||| ||||||||||| Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTAAGCTAG-CCCAATCCCAAAGATCCG 28609 Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628 ||| |||| |||||| || || || ||| || ||| | Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549 Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC-------GCCTCTAATGCA 62681 | || ||||||| || | ||| || |||||| || || ||| Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGC-------CAACTCCATGGAAGCAGTCAAAGCA 28496 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAA 62740 ||| ||||||||||| ||||| | | || || | |||| || || ||| || || Sbjct 28495 GCGTGGTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAA 28437 Query 62741 TGGATAATTTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 |||| | ||||| || ||| || || || | ||||| ||||||| | | |||||| Sbjct 28436 TGGAAGACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGT 28379 Query 62799 CTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857 || || | ||| | |||| || || || | ||| || || || ||||| ||||| Sbjct 28378 CTGTGGCGGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAAT 28320 Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--T 62915 || || | || |||| | |||| | || || | || || | || ||| | | Sbjct 28319 CTTGTTCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGT 28260 Query 62916 CGCC--CATCTATTACAAACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTAC 62971 || | ||| | | | ||||| | || | ||||||| || || || || || Sbjct 28259 GGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAAC 28200 Query 62972 CTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030 ||||| || | | || |||| | || ||||| || | || | ||| || | Sbjct 28199 CTCATCAGG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTAC 28141 Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090 | | ||| | ||| || |||||| ||| || |||||||| ||||| ||||| || | | Sbjct 28140 CAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTC 28081 Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150 |||| || | |||| || | || | | ||| | | | ||||| || | | Sbjct 28080 CAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---T 28024 Query 63151 TGTATCTCCTTTCTCTT----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206 || | |||| | || |||||| ||||| ||||| ||||| || | Sbjct 28023 TGCGGC-CCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAG 27965 Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266 || | | |||| | |||||| |||| || |||||||| | ||| || || | | Sbjct 27964 ACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCA 27905 Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATG 63325 || || ||||| |||||||| |||||||| || || || ||| ||||| | | | | Sbjct 27904 ACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAAC 27846 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| ||||| |||||| || ||||||||| | | || ||| | ||||| || Sbjct 27845 CTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGG 27786 Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445 || | ||| ||||| | | | ||||| || ||||| || || ||||| | |||| ||| Sbjct 27785 CTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGC 27726 Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505 |||||| || |||| | | ||| |||| || ||||| || | || || ||||||| Sbjct 27725 GGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGC 27666 Query 63506 GATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATT 63563 || || | ||| |||| || || | || |||| | || || || ||||| | Sbjct 27665 AATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTC 27608 Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623 || || || | || || || || ||||| ||||| || || ||||| || || || Sbjct 27607 TTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTC 27548 Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGT 63682 |||| | || || || ||| | ||| || | | | || || ||| ||| | || Sbjct 27547 ATGTCGATGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGT 27489 Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742 || || ||||| || || | || || | | ||||| || || || || | || Sbjct 27488 TGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTC 27429 Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799 |||||| || ||||| || ||||||||||| | ||| || || || | ||| Sbjct 27428 AATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372 >seq2036 Length=314316 Score = 111 bits (122), Expect = 2e-19 Identities = 291/443 (66%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 |||||||| || || || |||| ||| ||||||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467 | | ||| ||||| || || || ||| ||||||| | |||||| || | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527 || ||||||||| |||| | || ||||| ||||| || || | || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587 | | || | | | | || || |||| || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 || ||| ||| |||||||| || | || || ||||| || || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 || ||||||||||| || | ||| || ||||| ||||| || || |||||||| || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 33708 TCTACTGCAGCAAAGGCAATAAG 33730 || || ||||||||||||| ||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629797201782480