Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 262 5e-65
seq2036 111 2e-19
>seq2371
Length=131994
Score = 262 bits (290), Expect = 5e-65
Identities = 1152/1797 (64%), Gaps = 56/1797 (3%)
Strand=Plus/Minus
Query 62036 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094
|||| ||| |||||| || ||||| || || || | | ||||| |||||||||||||
Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086
Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154
| || || ||||| | |||| || ||||||||||| || | || | |
Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026
Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214
|||| || ||||| ||||| |||||| |||||| ||||| || || | ||| ||||
Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966
Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274
|||| | | ||| || ||||| |||||||||| ||| || |||| ||| ||||
Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906
Query 62275 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331
| |||| | ||||| | || |||||||||||||| || | || || | || || |
Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846
Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391
| | ||| ||| | | | || | | | | || || || || || ||||
Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786
Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451
|||| ||||||| | || | |||| ||| || || ||| || || || | |||
Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726
Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511
| || ||| | ||||||| || ||||| |||||||| || || | ||||| |
Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666
Query 62512 TTCTAAGACCGTATGTTCTG--ATTTTAT-CTTTTAGATGTTCCCAATTCCAAAGATCCG 62568
| | | ||| ||||| | || | | |||| || | |||||| |||||||||||
Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTAAGCTAG-CCCAATCCCAAAGATCCG 28609
Query 62569 ACGGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62628
||| |||| |||||| || || || ||| || ||| |
Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549
Query 62629 ATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTC-------GCCTCTAATGCA 62681
| || ||||||| || | ||| || |||||| || || |||
Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGC-------CAACTCCATGGAAGCAGTCAAAGCA 28496
Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGAT-CTTGTGCTTCCGGGCTATCAAA 62740
||| ||||||||||| ||||| | | || || | |||| || || ||| || ||
Sbjct 28495 GCGTGGTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAA 28437
Query 62741 TGGATAATTTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798
|||| | ||||| || ||| || || || | ||||| ||||||| | | ||||||
Sbjct 28436 TGGAAGACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGT 28379
Query 62799 CTATGTCTCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAAT 62857
|| || | ||| | |||| || || || | ||| || || || ||||| |||||
Sbjct 28378 CTGTGGCGGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAAT 28320
Query 62858 TTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--T 62915
|| || | || |||| | |||| | || || | || || | || ||| | |
Sbjct 28319 CTTGTTCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGT 28260
Query 62916 CGCC--CATCTATTACAAACATGTTC--AATGCAACAGATGCCAGATTACACACGGCTAC 62971
|| | ||| | | | ||||| | || | ||||||| || || || || ||
Sbjct 28259 GGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAAC 28200
Query 62972 CTCATTAGCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTC 63030
||||| || | | || |||| | || ||||| || | || | ||| || |
Sbjct 28199 CTCATCAGG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTAC 28141
Query 63031 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTAC 63090
| | ||| | ||| || |||||| ||| || |||||||| ||||| ||||| || | |
Sbjct 28140 CAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTC 28081
Query 63091 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATT 63150
|||| || | |||| || | || | | ||| | | | ||||| || | |
Sbjct 28080 CAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---T 28024
Query 63151 TGTATCTCCTTTCTCTT----TCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAA 63206
|| | |||| | || |||||| ||||| ||||| ||||| || |
Sbjct 28023 TGCGGC-CCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAG 27965
Query 63207 ACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 63266
|| | | |||| | |||||| |||| || |||||||| | ||| || || | |
Sbjct 27964 ACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCA 27905
Query 63267 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATG 63325
|| || ||||| |||||||| |||||||| || || || ||| ||||| | | | |
Sbjct 27904 ACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAAC 27846
Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385
||||| ||||| |||||| || ||||||||| | | || ||| | ||||| ||
Sbjct 27845 CTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGG 27786
Query 63386 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63445
|| | ||| ||||| | | | ||||| || ||||| || || ||||| | |||| |||
Sbjct 27785 CTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGC 27726
Query 63446 GGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGA 63505
|||||| || |||| | | ||| |||| || ||||| || | || || |||||||
Sbjct 27725 GGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGC 27666
Query 63506 GATATAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATT 63563
|| || | ||| |||| || || | || |||| | || || || ||||| |
Sbjct 27665 AATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTC 27608
Query 63564 TTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATC 63623
|| || || | || || || || ||||| ||||| || || ||||| || || ||
Sbjct 27607 TTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTC 27548
Query 63624 ATGTTAAGTAGAAAACAGCTAGACATTTGGTGAC-GAGTAGTTCCCGCATTAAATAAGGT 63682
|||| | || || || ||| | ||| || | | | || || ||| ||| | ||
Sbjct 27547 ATGTCGATGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGT 27489
Query 63683 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTC 63742
|| || ||||| || || | || || | | ||||| || || || || | ||
Sbjct 27488 TGGTGAGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTC 27429
Query 63743 TATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTC 63799
|||||| || ||||| || ||||||||||| | ||| || || || | |||
Sbjct 27428 AATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTC 27372
>seq2036
Length=314316
Score = 111 bits (122), Expect = 2e-19
Identities = 291/443 (66%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350
|||||||| ||| | ||||| || ||||| || || || ||||| | | || || ||
Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671
Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410
|||||||| || || || |||| ||| ||||||| || | | || | |||||
Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728
Query 33411 AAT---CTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATG 33467
| | ||| ||||| || || || ||| ||||||| | |||||| || |
Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788
Query 33468 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATA 33527
|| ||||||||| |||| | || ||||| ||||| || || | || ||
Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848
Query 33528 ATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCG 33587
| | || | | | | || || |||| || || || | | ||||||
Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908
Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647
|| ||| ||| |||||||| || | || || ||||| || || || || || | |
Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968
Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707
|| ||||||||||| || | ||| || ||||| ||||| || || |||||||| ||
Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028
Query 33708 TCTACTGCAGCAAAGGCAATAAG 33730
|| || ||||||||||||| |||
Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629797201782480
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