Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 96.9 3e-15
>seq2371
Length=131994
Score = 96.9 bits (106), Expect = 3e-15
Identities = 291/447 (65%), Gaps = 8/447 (2%)
Strand=Plus/Minus
Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166
|| || ||||| | ||| ||||||||||| || | || || | | || || ||||
Sbjct 27814 AGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGC 27755
Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226
|| | ||| || |||| || ||||| | | ||||| || | | | | |||||| ||
Sbjct 27754 TTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACG 27695
Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282
|| || || || || |||||| |||||| || |||| ||| | || || || |
Sbjct 27694 ATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGA 27635
Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342
|| || | | ||| || |||||||| | ||||| || | || || || || ||
Sbjct 27634 AC--ATTG--AGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGT 27579
Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTG 38402
|| | ||||| || || ||||| ||||| || | | || || ||| | |||
Sbjct 27578 GTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTG 27519
Query 38403 AGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGA 38462
| | ||| || || || ||| | ||| || || || || |||| | || ||
Sbjct 27518 TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGA 27459
Query 38463 CAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATAC 38522
|| | || || ||||| || || | || ||||| ||||||| || || | || ||
Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399
Query 38523 CCTCATTAGCATATGTTGTGGTCTTTC 38549
| ||| | |||||||||||| | |||
Sbjct 27398 ACGCATGATCATATGTTGTGGACGTTC 27372
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849
||||||||||| | || || || || | |||| | | ||| |||||||||||
Sbjct 29140 TCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTC 29081
Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATG-TAGGATT 36908
|| || ||||| |||| || |||||||||||||| | | || | ||| | ||||
Sbjct 29080 TTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAA-TCTTCCCCATGGTTGGATC 29022
Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968
| || | || ||||||||||| |||||| || |||||||| | |||||| |||||
Sbjct 29021 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCAT 28962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468509625653040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |