Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2371 96.9 3e-15 >seq2371 Length=131994 Score = 96.9 bits (106), Expect = 3e-15 Identities = 291/447 (65%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 38107 AGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTT 38166 || || ||||| | ||| ||||||||||| || | || || | | || || |||| Sbjct 27814 AGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGC 27755 Query 38167 TTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACT 38226 || | ||| || |||| || ||||| | | ||||| || | | | | |||||| || Sbjct 27754 TTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACG 27695 Query 38227 ATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATT---- 38282 || || || || || |||||| |||||| || |||| ||| | || || || | Sbjct 27694 ATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGA 27635 Query 38283 ACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGT 38342 || || | | ||| || |||||||| | ||||| || | || || || || || Sbjct 27634 AC--ATTG--AGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGT 27579 Query 38343 ATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTG 38402 || | ||||| || || ||||| ||||| || | | || || ||| | ||| Sbjct 27578 GTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTG 27519 Query 38403 AGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGA 38462 | | ||| || || || ||| | ||| || || || || |||| | || || Sbjct 27518 TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGA 27459 Query 38463 CAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATAC 38522 || | || || ||||| || || | || ||||| ||||||| || || | || || Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399 Query 38523 CCTCATTAGCATATGTTGTGGTCTTTC 38549 | ||| | |||||||||||| | ||| Sbjct 27398 ACGCATGATCATATGTTGTGGACGTTC 27372 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||||||||| | || || || || | |||| | | ||| ||||||||||| Sbjct 29140 TCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTC 29081 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATG-TAGGATT 36908 || || ||||| |||| || |||||||||||||| | | || | ||| | |||| Sbjct 29080 TTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAA-TCTTCCCCATGGTTGGATC 29022 Query 36909 ATCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCAT 36968 | || | || ||||||||||| |||||| || |||||||| | |||||| ||||| Sbjct 29021 CTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCAT 28962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468509625653040