Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2371 242 5e-59 seq2036 129 8e-25 >seq2371 Length=131994 Score = 242 bits (268), Expect = 5e-59 Identities = 1318/2074 (64%), Gaps = 46/2074 (2%) Strand=Plus/Minus Query 64829 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 |||| ||| |||||| || ||||| || || || | | ||||| ||||||||||||| Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 | || || ||||| | |||| || ||||||||||| || | || | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 |||| || ||||| ||||| |||||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067 |||| | | ||| || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 65068 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124 | |||| | ||||| | || |||||||||||||| || || || || | || || | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | | ||| ||| | | | || | | | | || || ||||| || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 | || ||||||| | || | |||| ||| || || ||| || || || | ||| Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 | || ||| | ||||||| || ||||| |||||||| || || | ||||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 65305 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCG 65361 | | | ||| ||||| | || | | |||| || | |||||| ||||||||||| Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCG 28609 Query 65362 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 65421 ||| ||| ||| || || || ||| || ||| | Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549 Query 65422 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 65481 | || || |||| || | ||| || | || || || ||| ||| | Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGT 28489 Query 65482 AAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAA 65540 |||||||||||||||| | | || || | |||| || || || || |||||| | Sbjct 28488 AAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGA 28430 Query 65541 TTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 65598 ||||| || ||| || || || | ||||| ||||||| | | |||||||| || | Sbjct 28429 CG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372 Query 65599 TCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 65657 ||| | |||| || || || | ||| || || || ||||| ||||| || || Sbjct 28371 GGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTC 28313 Query 65658 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGC--TC 65713 | || |||| | |||| | || || | || || | || ||| | | || || Sbjct 28312 AAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTC 28253 Query 65714 ATCTATTACAAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 ||| | | | ||||| | || | ||||||| || ||||| || ||||||| | Sbjct 28252 TTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCA 28193 Query 65772 GCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 65830 | | | || |||| | || ||||| || | || | |||||| || | ||| Sbjct 28192 GG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134 Query 65831 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 65890 | ||| || |||||| ||| || |||||||| ||||| ||||| || | ||||| || Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074 Query 65891 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 65950 | |||| || | || | | ||| | | | ||||| || | ||| | Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGCC 28017 Query 65951 CTTTTC-TCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 66007 ||| | || |||||| ||||| ||||| ||||| || | || | | | Sbjct 28016 CTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGC 27957 Query 66008 CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 66067 ||| |||||||| |||| || |||||||| | ||| || || | | || || || Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTT 27897 Query 66068 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAAATCTCTGGTTCTATGTTCCTCGT 66126 ||| |||||||| |||||||| || || || ||| | ||| | || | | ||||| | Sbjct 27896 CATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCCT 27838 Query 66127 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGT 66186 |||| |||||| || ||||||||| | | || ||| ||||| || || | || Sbjct 27837 TTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGT 27778 Query 66187 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 66246 | ||||| | | | ||||| || ||||| || || ||||| | |||| ||||||||| | Sbjct 27777 AGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGT 27718 Query 66247 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGC 66306 | |||| | | ||| |||| || || ||||| | || || || |||| || || Sbjct 27717 TGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAG 27658 Query 66307 TTCCACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 66364 ||| | || || || | || |||| | || || || ||||| | || || || Sbjct 27657 CACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGAAAT 27600 Query 66365 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 66424 | || || || || || || ||||| || || || || || ||| |||||| | Sbjct 27599 CATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGAT 27540 Query 66425 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 66483 || || || ||| | ||| || | | || || ||| ||| | || || || | Sbjct 27539 GAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGG 27481 Query 66484 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 66543 |||| || || | || || | | ||||| || || || || | || |||||| Sbjct 27480 CGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCT 27421 Query 66544 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 66603 || ||||| || ||||||||||| | ||| || || || | ||| ||||||| Sbjct 27420 CGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGC 27361 Query 66604 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 66663 | | | | || ||| || | || || |||||||| || | ||| || Sbjct 27360 CATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAA 27301 Query 66664 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-C 66722 | || || ||||| | || | |||||||| | ||| | || | || ||| Sbjct 27300 AATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAATCGT 27241 Query 66723 ATGGTAATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAA 66781 ||| | | ||| || || || || ||| |||| ||| |||||||| | | | Sbjct 27240 ATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATGGTA 27183 Query 66782 TAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATACGG 66840 ||| || || || | | | ||| | || || |||| ||||| || || || || | Sbjct 27182 TAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGACTG 27124 Query 66841 CTATTCTAGCGGCTATAATGGCATAATCCGGATG 66874 | ||||| || || | ||||||||||| ||||| Sbjct 27123 CAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090 >seq2036 Length=314316 Score = 129 bits (142), Expect = 8e-25 Identities = 295/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 |||||||| |||||||| ||| ||| || |||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 35987 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 36043 | | ||| |||||||| || || ||| ||||||| | |||||| || | | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 36044 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 36103 || ||||||||| |||| | || ||||| ||||| ||| || || || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 36104 ATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 36163 | | | |||| | | | || || ||| | || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 || ||| ||| |||||||| || | || || |||||||| || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 || ||||||||||| || | ||| || ||||| || || || ||| ||||| || || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 36284 TCTACTGCCGCAAAGGCAATAAG 36306 || || || |||||||||| ||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658151483428440