Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq2036 89.7 4e-13
>seq2036
Length=314316
Score = 89.7 bits (98), Expect = 4e-13
Identities = 256/392 (65%), Gaps = 4/392 (1%)
Strand=Plus/Minus
Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799
|||||| | |||||||| |||||||| || || | || ||| || || || ||||
Sbjct 236055 ACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCAT 235996
Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859
|||||| ||||||| ||| |||||| | || | | || ||||||||||||||
Sbjct 235995 CTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTC 235936
Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACA- 22918
|||||| || ||||| ||| ||||| || || | || || || || || ||
Sbjct 235935 CCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCACTTG--AAGCAT 235878
Query 22919 -AACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977
|| | ||| | | || | |||| | || || || || |||||| |
Sbjct 235877 CGCCCAAGCAAGGCAGCAGTCCAAGCAGTCATCACCGAGGCTGTCGAGATTGAGCAAGAG 235818
Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037
||||| ||||| || | || || || |||||| || |||| |
Sbjct 235817 TTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGAAGCAA 235758
Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097
||||| ||||||| || ||||| || ||| | | || || ||| ||| | || ||
Sbjct 235757 TACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAAG 235698
Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACAT 23129
|||||||| ||||| || |||||||| |||||
Sbjct 235697 GTTGCCAACCCATTCGACTTCATGGAGAACAT 235666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356222350922173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |