Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq2036 89.7 4e-13 >seq2036 Length=314316 Score = 89.7 bits (98), Expect = 4e-13 Identities = 256/392 (65%), Gaps = 4/392 (1%) Strand=Plus/Minus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||||| | |||||||| |||||||| || || | || ||| || || || |||| Sbjct 236055 ACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCAT 235996 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||| ||||||| ||| |||||| | || | | || |||||||||||||| Sbjct 235995 CTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTC 235936 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACA- 22918 |||||| || ||||| ||| ||||| || || | || || || || || || Sbjct 235935 CCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTCCCACTTG--AAGCAT 235878 Query 22919 -AACCGTGTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGGCT 22977 || | ||| | | || | |||| | || || || || |||||| | Sbjct 235877 CGCCCAAGCAAGGCAGCAGTCCAAGCAGTCATCACCGAGGCTGTCGAGATTGAGCAAGAG 235818 Query 22978 TTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTG 23037 ||||| ||||| || | || || || |||||| || |||| | Sbjct 235817 TTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGAAGCAA 235758 Query 23038 TACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAAC 23097 ||||| ||||||| || ||||| || ||| | | || || ||| ||| | || || Sbjct 235757 TACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAAG 235698 Query 23098 GTTGCCAATCCATTTGATTTCATGGATAACAT 23129 |||||||| ||||| || |||||||| ||||| Sbjct 235697 GTTGCCAACCCATTCGACTTCATGGAGAACAT 235666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356222350922173