Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2371 306 5e-78 seq2036 131 2e-25 >seq2371 Length=131994 Score = 306 bits (338), Expect = 5e-78 Identities = 1338/2075 (64%), Gaps = 48/2075 (2%) Strand=Plus/Minus Query 78708 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| ||| |||||| || ||||| || || || | | ||||| ||||||||||||| Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 | || || ||||| | |||| || |||||||||||| || | || | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 |||| || ||||| ||||| |||||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | | ||| || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 78947 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 | |||| | ||||| | || |||||||||||||| || || || || | || || | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | | || ||| | | | || | | | | || || ||||| || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | || ||||||| | || | |||| ||| || || ||| ||||| || | | | Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 | || ||| | ||||||| || || ||||||||||| || || | ||||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 79184 TTCTAAGACCGTAT-GATCTGATTTTATCTTTTAGAGATT-CCCAATCCCAAAGATCAGA 79241 | | | ||| | | || | || | | |||| || | |||||||||||||||| | Sbjct 28665 TGCGGATACCATGTTGAGCA-ATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCGT 28608 Query 79242 CGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTA 79301 || |||| ||| | |||||||| || || || || ||| ||| ||| Sbjct 28607 AGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTA 28548 Query 79302 TGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATA 79361 || ||||| | || | | | || || || || || || ||| || Sbjct 28547 AGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTA 28488 Query 79362 AATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCTAGGCTATCAAATGGATAAT 79420 |||||||||||| || | | ||||| | |||| || ||| || || |||||| | Sbjct 28487 AATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGAC 28429 Query 79421 TTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 ||||| || ||| || || || | ||||| ||||||| | | |||||||| || | Sbjct 28428 G-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCG 28371 Query 79479 CTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 79537 ||| | |||| || || || | ||| || || || ||||| ||||| || || | Sbjct 28370 GAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCA 28312 Query 79538 GATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCCATCT 79596 ||| |||| | |||| | || || | || || | || ||| || | | ||| Sbjct 28311 AGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCT 28252 Query 79597 ATTA--CAA-ACATGTTCAACGCGACAG--ATGCCAGATTACAAACGGCTACCTCATTAG 79651 | ||| | ||||| | | ||| |||||| || ||||| || ||||||| || Sbjct 28251 TCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAG 28192 Query 79652 CATCCGCA-TATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTT 79710 | | || |||| | |||||||| || | ||| | ||||| || | ||| Sbjct 28191 G-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTC 28133 Query 79711 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCA 79770 | ||| || |||||| ||| || |||||||| ||||| ||||| || | ||||| || Sbjct 28132 TTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCG 28073 Query 79771 ATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTC 79830 | |||| || | || | | ||| | | | ||||| || | |||| | | Sbjct 28072 GTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCT---CTTGCGGCCC 28016 Query 79831 TTTTC-TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCT 79887 || | || ||||||| || || ||||| ||||| || | || ||| | Sbjct 28015 TTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCC 27956 Query 79888 AATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTT--ACTCGTT 79945 || |||||||| || | ||| |||||||| | ||| || | || ||| || || | Sbjct 27955 AAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACGCT 27898 Query 79946 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCG 80004 |||| |||||||| |||||||| || || || ||| ||||| | || | | |||||| Sbjct 27897 TCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCC 27839 Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 ||||| |||||| || ||||||||| | | || ||| | ||||| || || | | Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || ||||| | | | || ||||| ||||| || || ||||| | |||| ||||||||| Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 || |||| | | ||| |||| || || ||||| | || || || |||| || || Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659 Query 80185 CTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 ||| |||| || || | || |||| | || || || ||||| | || || | Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGAAA 27601 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | | || || || || || || ||||| || || ||||| || || |||||| | Sbjct 27600 TCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGA 27541 Query 80303 GTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAA 80361 || || || ||| | ||| || | | || || ||| ||| | || || || Sbjct 27540 TGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAG 27482 Query 80362 GCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCC 80421 ||||| || || | || |||| | ||||| || || || || | || |||||| Sbjct 27481 GCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCC 27422 Query 80422 CATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 80481 || ||||| || ||||||||||| | ||| || || || | ||| ||||||| Sbjct 27421 TCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTG 27362 Query 80482 TTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 80541 || | | | || ||| || | || || |||||||| || | ||| | Sbjct 27361 CCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTA 27302 Query 80542 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC- 80600 || || || ||||| | || | |||||||| | ||| | || | || ||| Sbjct 27301 AAATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAATCG 27242 Query 80601 CATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 80659 ||| | | ||| || || || || ||| |||| ||| || ||||| | | Sbjct 27241 TATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATGGT 27184 Query 80660 ATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACG 80718 |||| || || || | | | ||| | || || |||| |||||| || || || || Sbjct 27183 ATAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGACT 27125 Query 80719 GCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 || ||||| || || | ||||||||||| ||||| Sbjct 27124 GCAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090 >seq2036 Length=314316 Score = 131 bits (144), Expect = 2e-25 Identities = 339/515 (66%), Gaps = 9/515 (2%) Strand=Plus/Plus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 |||||||| || || || |||| ||| || |||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 49789 AAT---CTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 49845 | | ||| |||||||| || || ||| ||||||| | |||||| || | | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 49846 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 49905 || ||||||||| |||| | || ||||| ||||| || || || || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 49906 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 49965 | | | || | | | | || || ||||| || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 49966 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 50025 || ||| ||| |||||||| || | || | |||||||| || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 50026 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCT 50085 || ||||||||||| || | ||| || ||||| || || || ||| |||||||| || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 50086 TCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG---CGCTGTCATGTATCCAC 50142 || || || |||||||||||||| | | || | | | | |||| || ||||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGATCCAT 236088 Query 50143 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGG 50177 ||||||||| |||||||| || | ||||| Sbjct 236089 CGGACAGCCCAATCAGCCTTCTTCTTAATGCAAGG 236123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718245537069240