Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2371 251 1e-61 seq2036 129 8e-25 >seq2371 Length=131994 Score = 251 bits (278), Expect = 1e-61 Identities = 1322/2077 (64%), Gaps = 52/2077 (3%) Strand=Plus/Minus Query 70791 CTTGTCCAA-TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849 |||| ||| ||| ||||| ||||| | || || || | ||||| ||||||||||| | Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909 | || || ||||| | |||| || ||||||||||| || | || | | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969 |||| ||||| || ||||| || ||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 71029 |||| | | ||| || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 71030 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086 | |||| | ||||| | || |||||||||||||| || ||||| || | ||||| | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146 | | || ||| | | | || | | | | || || ||||| || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206 | || ||||||| | || | |||| ||| || || ||| || || || | ||| Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266 | || ||| | ||||||| || ||||| |||||||| || || | | ||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 71267 TTCTAAGACCATGT-GATCGGATTTTATCTTTTAGAGATT-CCCAATTCCAAAGATCCGA 71324 | | | ||||||| || | || | | |||| || | |||||| ||||||||||| Sbjct 28665 TGCGGATACCATGTTGAGCA-ATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCGT 28608 Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATA 71384 ||| ||| ||| || || ||| ||| || Sbjct 28607 AGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTA 28548 Query 71385 TGTATCGTATGGTCCTTCTTT-TTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATA 71441 || || |||| || | | || | | | | || || | | || || | | Sbjct 28547 AGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTG 28491 Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||||||||||||| || | | ||||| | |||| || || ||| || |||||| Sbjct 28490 GTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAA 28432 Query 71501 AATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTG 71558 | ||||| || ||| || || || | ||||| || |||| | | ||||||||||| Sbjct 28431 GACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTG 28374 Query 71559 TCTCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617 | ||| | |||| || || || | ||| || || || ||||| ||||| || | Sbjct 28373 GCGGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGT 28315 Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA- 71676 | | || |||| | |||| | || || | || || | || ||| | | || Sbjct 28314 TCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAG 28255 Query 71677 ---TCTATTACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731 ||| | | | | ||| || || | ||||||| || ||||| || ||||||| Sbjct 28254 TCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCAT 28195 Query 71732 TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 71791 || | |||| | ||||||||| || | || | |||||| || | || Sbjct 28194 CAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGAT 28135 Query 71792 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTT 71851 | | ||| || |||||| ||| || |||||||| ||||| || || || | ||||| | Sbjct 28134 TCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCT 28075 Query 71852 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATC 71911 | | |||| || | || | | ||| | | | ||||| || | |||| | Sbjct 28074 CGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCT---CTTGCGGC 28018 Query 71912 TCTTTTC-TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968 ||| | || ||||||| || || ||||| ||||| || | | | | Sbjct 28017 CCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGG 27958 Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCG 72026 | || |||||||| ||||| || |||||||||| ||| || | || ||| || || Sbjct 27957 CCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACG 27900 Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 72085 ||||| |||||||| |||||||| || || || ||| ||||| | || | | ||||| Sbjct 27899 CTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCT 27841 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | ||||| |||||| || ||||||||| | | || ||| | ||||| || || | Sbjct 27840 CCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGA 27781 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 ||| ||||| | | | || || || ||||| || || ||||| | |||| |||||||| Sbjct 27780 GGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGT 27721 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 | || |||| | | ||| |||| || || ||||| || || || |||| || | Sbjct 27720 TGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGT 27661 Query 72266 AGCTTCCACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | ||| |||| || || || || |||| | || || || ||||| | || || Sbjct 27660 AAGCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGA 27603 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383 || | || || || || || || ||||| || || || || || ||| |||||| Sbjct 27602 AATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTC 27543 Query 72384 AAGTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 | || || || ||| | ||| || | | || || ||| ||| | || || | Sbjct 27542 GATGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTG 27484 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 | ||||| || || | || |||| | ||||| || || || || | || |||| Sbjct 27483 AGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATAT 27424 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 || |||||||| || ||||||||||| | |||||| || || | ||| ||||| Sbjct 27423 CCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCT 27364 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 || || | | | || ||| || | || || |||||||| || | ||| Sbjct 27363 TGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGT 27304 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 ||| || || ||||| | || | || ||||| | ||| | || | || || Sbjct 27303 TAAAATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAAT 27244 Query 72683 C-CATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740 | ||| | | ||| || || || || ||| |||| ||| || ||||| | Sbjct 27243 CGTATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATG 27186 Query 72741 GAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATA 72799 | |||| || || || | | | ||| | || || |||| |||||| || || || | Sbjct 27185 GTATAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGA 27127 Query 72800 CGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | || ||||| || || || ||||||||||| ||||| Sbjct 27126 CTGCAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090 >seq2036 Length=314316 Score = 129 bits (142), Expect = 8e-25 Identities = 295/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 |||||||| ||| | ||||| || ||||| || || |||||||| | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 |||||||| || || || |||| ||| || |||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 41894 AAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 41950 | | ||| |||| || || || ||| ||||||| | |||||| || | | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010 || ||||||||| |||| | || ||||| ||||| ||| || || || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | | | |||| | | | || || ||| | || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 || ||| ||| ||||||||||| | || || |||||||| || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 || ||||||||||| || | ||| || || || || || || ||| |||||||| || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 42191 TCTACTGCCGCAAAGGCAATAAG 42213 || || || |||||||||| ||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671117463479160