Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 251 1e-61
seq2036 129 8e-25
>seq2371
Length=131994
Score = 251 bits (278), Expect = 1e-61
Identities = 1322/2077 (64%), Gaps = 52/2077 (3%)
Strand=Plus/Minus
Query 70791 CTTGTCCAA-TGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGC 70849
|||| ||| ||| ||||| ||||| | || || || | ||||| ||||||||||| |
Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086
Query 70850 CTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAG 70909
| || || ||||| | |||| || ||||||||||| || | || | | |
Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026
Query 70910 GATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 70969
|||| ||||| || ||||| || ||| |||||| ||||| || || | ||| ||||
Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966
Query 70970 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 71029
|||| | | ||| || ||||| |||||||||| ||| || |||| ||| ||||
Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906
Query 71030 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGA 71086
| |||| | ||||| | || |||||||||||||| || ||||| || | ||||| |
Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846
Query 71087 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTT 71146
| | || ||| | | | || | | | | || || ||||| || ||||
Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786
Query 71147 GAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACT 71206
| || ||||||| | || | |||| ||| || || ||| || || || | |||
Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726
Query 71207 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTAT 71266
| || ||| | ||||||| || ||||| |||||||| || || | | ||| |
Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666
Query 71267 TTCTAAGACCATGT-GATCGGATTTTATCTTTTAGAGATT-CCCAATTCCAAAGATCCGA 71324
| | | ||||||| || | || | | |||| || | |||||| |||||||||||
Sbjct 28665 TGCGGATACCATGTTGAGCA-ATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCGT 28608
Query 71325 TGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATA 71384
||| ||| ||| || || ||| ||| ||
Sbjct 28607 AGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTA 28548
Query 71385 TGTATCGTATGGTCCTTCTTT-TTCGGCTAGTTCAC--AACTCGCCTCTAATGCTCCATA 71441
|| || |||| || | | || | | | | || || | | || || | |
Sbjct 28547 AGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTC---AAAGCAGCGTG 28491
Query 71442 ATAAATGGTTTCGAAAATCTTCTTATTGAGAT-CTTGTGCTTCCGGGCTATCAAATGGAT 71500
|||||||||||||| || | | ||||| | |||| || || ||| || ||||||
Sbjct 28490 GTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAA 28432
Query 71501 AATTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTG 71558
| ||||| || ||| || || || | ||||| || |||| | | |||||||||||
Sbjct 28431 GACG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTG 28374
Query 71559 TCTCTTATTAGAAATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 71617
| ||| | |||| || || || | ||| || || || ||||| ||||| || |
Sbjct 28373 GCGGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGT 28315
Query 71618 TGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCA- 71676
| | || |||| | |||| | || || | || || | || ||| | | ||
Sbjct 28314 TCAAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAG 28255
Query 71677 ---TCTATTACAAACACGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCAT 71731
||| | | | | ||| || || | ||||||| || ||||| || |||||||
Sbjct 28254 TCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCAT 28195
Query 71732 TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 71791
|| | |||| | ||||||||| || | || | |||||| || | ||
Sbjct 28194 CAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGAT 28135
Query 71792 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTT 71851
| | ||| || |||||| ||| || |||||||| ||||| || || || | ||||| |
Sbjct 28134 TCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCT 28075
Query 71852 CAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATC 71911
| | |||| || | || | | ||| | | | ||||| || | |||| |
Sbjct 28074 CGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCT---CTTGCGGC 28018
Query 71912 TCTTTTC-TCTT--TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGT 71968
||| | || ||||||| || || ||||| ||||| || | | | |
Sbjct 28017 CCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGG 27958
Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTT--ACTCG 72026
| || |||||||| ||||| || |||||||||| ||| || | || ||| || ||
Sbjct 27957 CCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGT--TCTTTTCAACACG 27900
Query 72027 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 72085
||||| |||||||| |||||||| || || || ||| ||||| | || | | |||||
Sbjct 27899 CTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCT 27841
Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145
| ||||| |||||| || ||||||||| | | || ||| | ||||| || || |
Sbjct 27840 CCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGA 27781
Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205
||| ||||| | | | || || || ||||| || || ||||| | |||| ||||||||
Sbjct 27780 GGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGT 27721
Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265
| || |||| | | ||| |||| || || ||||| || || || |||| || |
Sbjct 27720 TGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGT 27661
Query 72266 AGCTTCCACTGGCACGAATATTGCTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGA 72323
| ||| |||| || || || || |||| | || || || ||||| | || ||
Sbjct 27660 AAGCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGA 27603
Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383
|| | || || || || || || ||||| || || || || || ||| ||||||
Sbjct 27602 AATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTC 27543
Query 72384 AAGTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAG 72442
| || || || ||| | ||| || | | || || ||| ||| | || || |
Sbjct 27542 GATGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTG 27484
Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502
| ||||| || || | || |||| | ||||| || || || || | || ||||
Sbjct 27483 AGGCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATAT 27424
Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562
|| |||||||| || ||||||||||| | |||||| || || | ||| |||||
Sbjct 27423 CCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCT 27364
Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622
|| || | | | || ||| || | || || |||||||| || | |||
Sbjct 27363 TGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGT 27304
Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682
||| || || ||||| | || | || ||||| | ||| | || | || ||
Sbjct 27303 TAAAATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAAT 27244
Query 72683 C-CATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTT 72740
| ||| | | ||| || || || || ||| |||| ||| || ||||| |
Sbjct 27243 CGTATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATG 27186
Query 72741 GAATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATA 72799
| |||| || || || | | | ||| | || || |||| |||||| || || || |
Sbjct 27185 GTATAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGA 27127
Query 72800 CGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836
| || ||||| || || || ||||||||||| |||||
Sbjct 27126 CTGCAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090
>seq2036
Length=314316
Score = 129 bits (142), Expect = 8e-25
Identities = 295/443 (67%), Gaps = 6/443 (1%)
Strand=Plus/Plus
Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833
|||||||| ||| | ||||| || ||||| || || |||||||| | | || || ||
Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671
Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893
|||||||| || || || |||| ||| || |||| || | | || | |||||
Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728
Query 41894 AAT---CTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 41950
| | ||| |||| || || || ||| ||||||| | |||||| || | |
Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788
Query 41951 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 42010
|| ||||||||| |||| | || ||||| ||||| ||| || || || ||
Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848
Query 42011 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070
| | | |||| | | | || || ||| | || || || | | ||||||
Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908
Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130
|| ||| ||| ||||||||||| | || || |||||||| || || || || | |
Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968
Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190
|| ||||||||||| || | ||| || || || || || || ||| |||||||| ||
Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028
Query 42191 TCTACTGCCGCAAAGGCAATAAG 42213
|| || || |||||||||| |||
Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671117463479160
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