Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq778 118 2e-21 seq2459 100 7e-16 seq2036 87.8 4e-12 >seq778 Length=242110 Score = 118 bits (130), Expect = 2e-21 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| ||||| || || || || || | |||||| || || || || ||| Sbjct 99305 GTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCAAGCTGCTTGCCA 99246 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||| || || || || || || || ||||||||||| | ||| Sbjct 99245 GCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTTG 99186 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | ||||||| || || ||||| || || || ||||||||||| Sbjct 99185 ACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCAGT 99133 Score = 96.9 bits (106), Expect = 8e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || || || |||||||| || |||| || || || ||||| || || || ||| Sbjct 99527 TCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAA 99468 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || | |||||| || || || || || || |||||||||||||| | || ||||| Sbjct 99467 ATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTG 99408 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 || | || || || ||| ||||| | || || ||||| || ||||| || || || Sbjct 99407 TCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACG 99348 Query 104549 AATATCTGCAT 104559 || || ||||| Sbjct 99347 AAGATTTGCAT 99337 >seq2459 Length=125150 Score = 100 bits (110), Expect = 7e-16 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 ||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| | Sbjct 17178 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 17236 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | || || | ||| || || ||||| ||||||||||| || | | |||||| || || | Sbjct 17237 AAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTG 17296 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCT 104509 | ||||| || || ||||| ||||| | || ||||| || | ||| || | ||| || Sbjct 17297 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-CGAGGACTCA 17355 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| || || || ||||| || || Sbjct 17356 ACCTCAAGGGTGATGGTCTTGCCCGT 17381 >seq2036 Length=314316 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| ||||| || ||||| ||||| || ||||| || | ||||| ||| Sbjct 236048 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGG 235989 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 |||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | || Sbjct 235988 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAT 235929 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| ||||||||| || Sbjct 235928 GAGGGTCTCCACACCGACTTCGCATG 235903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151360176811428