Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq778 118 2e-21
seq2459 100 7e-16
seq2036 87.8 4e-12
>seq778
Length=242110
Score = 118 bits (130), Expect = 2e-21
Identities = 130/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||| ||||| || || || || || | |||||| || || || || |||
Sbjct 99305 GTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCAAGCTGCTTGCCA 99246
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || || | |||||| || || || || || || || ||||||||||| | |||
Sbjct 99245 GCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTTG 99186
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || || | ||||||| || || ||||| || || || |||||||||||
Sbjct 99185 ACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCAGT 99133
Score = 96.9 bits (106), Expect = 8e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| || || || |||||||| || |||| || || || ||||| || || || |||
Sbjct 99527 TCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAA 99468
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488
|| || | |||||| || || || || || || |||||||||||||| | || |||||
Sbjct 99467 ATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTG 99408
Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548
|| | || || || ||| ||||| | || || ||||| || ||||| || || ||
Sbjct 99407 TCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACG 99348
Query 104549 AATATCTGCAT 104559
|| || |||||
Sbjct 99347 AAGATTTGCAT 99337
>seq2459
Length=125150
Score = 100 bits (110), Expect = 7e-16
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 104332 TCCCCCTCTTAGCC-TAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
||| || | ||| | |||| || ||||| | || || || ||||| || || ||||| |
Sbjct 17178 TCCTCCACGTAGACGTAAG-ACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 17236
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| || || | ||| || || ||||| ||||||||||| || | | |||||| || || |
Sbjct 17237 AAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTG 17296
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCT 104509
| ||||| || || ||||| ||||| | || ||||| || | ||| || | ||| ||
Sbjct 17297 GAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTC-CGAGGACTCA 17355
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || || || ||||| || ||
Sbjct 17356 ACCTCAAGGGTGATGGTCTTGCCCGT 17381
>seq2036
Length=314316
Score = 87.8 bits (96), Expect = 4e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| ||||| || ||||| ||||| || ||||| || | ||||| |||
Sbjct 236048 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCCATCTTCTGG 235989
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
|||||||| | ||||| ||| | || | || ||||| ||||| ||||| | | ||
Sbjct 235988 TTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATCTCCCGTGAT 235929
Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283
|| ||| | ||| ||||||||| ||
Sbjct 235928 GAGGGTCTCCACACCGACTTCGCATG 235903
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151360176811428
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |