Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2397 114 2e-21 seq2278 109 9e-20 >seq2397 Length=17041 Score = 114 bits (126), Expect = 2e-21 Identities = 109/137 (80%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| |||||||||||||| || Sbjct 6604 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACCAAGCCAGCCAT 6662 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | ||||| ||||||||||| || ||||||||| | || | || |||| || |||| Sbjct 6663 CAGACGTCTCGCTCGTCGTGGAGGTGTCAAGCGTATTTCAGCCATGATCTACGAGGAGAC 6722 Query 16552 TCGTGATGTTTTGAAGA 16568 || | |||| | |||| Sbjct 6723 CCGCGGTGTTCTCAAGA 6739 >seq2278 Length=22643 Score = 109 bits (120), Expect = 9e-20 Identities = 85/99 (86%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| |||||| || ||||||||||| ||||| ||||| || || Sbjct 2901 GCCAAGCGTCACCGCAAGAT-TCTTCGTGACAACATCCAAGGTATCACAAAGCCTGCGAT 2959 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| || ||||||||||| ||||||||| |||| Sbjct 2960 CCGTCGTCTCGCACGTCGTGGTGGTGTCAAGCGTATCTC 2998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072831030563