Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2371 269 3e-67 seq2036 129 7e-25 >seq2371 Length=131994 Score = 269 bits (298), Expect = 3e-67 Identities = 1325/2075 (64%), Gaps = 48/2075 (2%) Strand=Plus/Minus Query 61985 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62043 |||| ||| |||||| || ||||| || || || | | ||||| ||||||||||||| Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 62044 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62103 | || || ||||| | |||| || ||||||||||| || | || | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 62104 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62163 |||| || ||||| ||||| |||||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 62164 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62223 |||| | | ||| || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 62224 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62280 | |||| | ||||| | || |||||||||||||| || || || || | || || | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 62281 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62340 | | ||| ||| | | | || | | | | || || ||||| || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 62341 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62400 | || ||||||| | || | |||| ||| || || ||| || || || | ||| Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 62401 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62460 | || ||| | ||||||| || ||||| |||||||| || || | ||||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 62461 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCG 62517 | | | ||| ||||| | || | | |||| || | |||||| ||||||||||| Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCG 28609 Query 62518 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62577 ||| ||| ||| || || || ||| || ||| | Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549 Query 62578 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62637 | || || |||| || | ||| || | || || || ||| ||| | Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGT 28489 Query 62638 AAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGTGCTTCCAGGCTATCAAATGGATAA 62696 |||||||||||||||| | | || || | |||| || || || || |||||| | Sbjct 28488 AAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGA 28430 Query 62697 TTTAAGAG--AATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62754 ||||| || ||| || || || | ||||| ||||||| | | |||||||| || | Sbjct 28429 CG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372 Query 62755 TCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62813 ||| | |||| || || || | ||| || || || ||||| ||||| || || Sbjct 28371 GGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTC 28313 Query 62814 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--C 62869 | || |||| | |||| | || || | || || | || ||| | | || | Sbjct 28312 AAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTC 28253 Query 62870 ATCTATTACAAACATGTTCA-AG-GCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62927 ||| | | | ||||| || || | ||||||| || ||||| || ||||||| | Sbjct 28252 TTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCA 28193 Query 62928 GCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATT 62986 | | | || |||| | || ||||| || | || | ||| || || | ||| Sbjct 28192 GG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134 Query 62987 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 63046 | ||| || |||||| ||| || |||||||| ||||| ||||| || | ||||| || Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074 Query 63047 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 63106 | |||| || | || | | ||| | | | ||||| || | ||| | Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGC- 28018 Query 63107 CCTTTCTCTT----TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGT 63162 |||| | || |||||| ||||| ||||| ||||| || | || | | Sbjct 28017 CCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGG 27958 Query 63163 CCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTT 63222 |||| |||||||| |||| || |||||||| | ||| || || | | || || | Sbjct 27957 CCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCT 27898 Query 63223 TCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCG 63281 |||| |||||||| |||||||| || || || ||| ||||| | || | | ||||| Sbjct 27897 TCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCC 27839 Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 ||||| |||||| || ||||||||| | | || ||| | ||||| || || | | Sbjct 27838 TTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGG 27779 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || ||||| | | | ||||| || ||||| || || ||||| | |||| ||||||||| Sbjct 27778 TAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTG 27719 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 || |||| | | ||| |||| || ||||| || | || || ||||||| || || Sbjct 27718 TTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAA 27659 Query 63462 CTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGA 63519 ||| |||| || || | || |||| | || || || ||||| | || || | Sbjct 27658 GCACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGAAA 27601 Query 63520 TTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAA 63579 | | || || || || ||||| |||||||| || ||||| || || |||||| | Sbjct 27600 TCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGA 27541 Query 63580 GTAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAA 63638 || || || ||| | ||| || | | || || ||| ||| | || || || Sbjct 27540 TGAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAG 27482 Query 63639 GCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC 63698 ||||| || || | || || | | ||||| || || || || | || |||||| Sbjct 27481 GCGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCC 27422 Query 63699 CATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTG 63758 || ||||| || ||||||||||| | ||| || || || | ||| ||||||| Sbjct 27421 TCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTG 27362 Query 63759 TTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAA 63818 | | | | || ||| || | || || |||||||| || | ||| | Sbjct 27361 CCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTA 27302 Query 63819 AAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATC- 63877 || || || ||||| | || | |||||||| | ||| | || | || ||| Sbjct 27301 AAATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAATCG 27242 Query 63878 CATGGTGATACTTG-AAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGA 63936 ||| | | ||| || || || || ||| |||| ||| || ||||| | | Sbjct 27241 TATGTT--TGTTTGCTGATCATTGGTGACAATTTTTGATTTCGAGGGTTGACATAATGGT 27184 Query 63937 ATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCCTTGTGTAGATTTGATACG 63995 |||| || || || | | | ||| | || || |||| |||||| || || || || Sbjct 27183 ATAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGACT 27125 Query 63996 GCTATTCTGGCGGCTAGAATGGCATAATCCGGATG 64030 || ||||| || || || ||||||||||| ||||| Sbjct 27124 GCAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090 >seq2036 Length=314316 Score = 129 bits (142), Expect = 7e-25 Identities = 295/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 |||||||| ||| | ||||| || ||||| || || || ||||| | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 |||||||| || || || |||| ||| || |||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 33133 AAT---CTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 33189 | | ||| ||||| || || || ||| ||||||| | |||||| || | | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 33190 AGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATA 33249 || ||||||||| |||| | || ||||| ||||| || || || || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 33250 ATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCG 33309 | | | || | | | | || || ||||| || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 33310 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGC 33369 || ||| ||| |||||||| || | || | |||||||| || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 33370 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCT 33429 || ||||||||||| || | ||| || ||||| ||||| || ||| |||||||| || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 33430 TCTACTGCAGCAAAGGCAATAAG 33452 || || ||||||||||||| ||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622927024297560