Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2371 118 1e-21 seq778 98.7 1e-15 >seq2371 Length=131994 Score = 118 bits (130), Expect = 1e-21 Identities = 426/649 (66%), Gaps = 23/649 (4%) Strand=Plus/Minus Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297 |||||| || | |||||| || ||||| | |||||||||| | || ||| ||| Sbjct 28016 CTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGC 27957 Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354 ||||| |||||||| | ||||||||||||| ||| | | ||||| || | Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGT---CAAGGTTCTTTTCAACACG 27900 Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414 |||||| || ||||| || |||| | ||| | | |||||| || || | ||||| Sbjct 27899 CTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTC 27840 Query 148415 GGCACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471 || || |||| || || | || ||||| || |||||||| ||||| Sbjct 27839 CTTTCCGTGGTT---CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTC 27783 Query 148472 GATGTATACGGTCATGGCGCCTT-TC-CTT-TTACCTCCTTGATCGACATGGCGTAGCA- 148527 || ||| | || | || || || ||| ||||| |||||||| |||| || ||| Sbjct 27782 GAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCG-AGCGG 27724 Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCA 148586 || | || ||||| || | ||| | | ||| | | |||| |||||||| || Sbjct 27723 TGTTGTTGAAAACCCGAAGCATAGGAACGATTCC-GTTGGAGTTTCCGTTTGTACCGGCA 27665 Query 148587 ATTTTACTATTGGTGGCGCGAATTTGAGTGA-CATTCAGGCCGATGCCGCCTCCGTGTTT 148645 || | | | |||||||| ||| |||| |||| || ||||| || ||| ||| || Sbjct 27664 ATGTAAGCACCAGTGGCGCGGATTCT-GTGAACATTGAGTCCGATACCACCTGCGTTCTT 27606 Query 148646 AGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAAT 148705 || |||||||||||| || | || | ||||| || | ||| |||||||| | || Sbjct 27605 TGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCAT 27546 Query 148706 GTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGG 148765 || | ||| |||| || || | ||| | | | | |||| | ||| || ||||| Sbjct 27545 GTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGG 27486 Query 148766 ACTAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGA 148824 ||||| ||||| | |||| | |||||| | || | |||||| || || | Sbjct 27485 TGAGGCGTGGGTGAAGTAC-TTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAA 27427 Query 148825 TGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873 | || || || || || | ||| |||||||| | ||| ||||| || Sbjct 27426 TATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGG 27378 >seq778 Length=242110 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || ||||| | ||||| | || | ||||| Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || |||||| || || || || || || ||||| ||| Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||||| || |||||| ||||| || |||| ||| | |||||||||||||| Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAAC 99516 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || |||| | || ||||||| Sbjct 99517 ATCCAAAAGGAGAGTACTCTTCACTTGGTCCT 99548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478646897321520