Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 118 1e-21
seq778 98.7 1e-15
>seq2371
Length=131994
Score = 118 bits (130), Expect = 1e-21
Identities = 426/649 (66%), Gaps = 23/649 (4%)
Strand=Plus/Minus
Query 148238 CTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTCGAATTCTTGGCCATAGCAATCGTT 148297
|||||| || | |||||| || ||||| | |||||||||| | || ||| |||
Sbjct 28016 CTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGC 27957
Query 148298 TAAACCGGGACACTCGTCGGGGCACATCAATGACCATTTCCCTCCTGTCTTT---ACCCT 148354
||||| |||||||| | ||||||||||||| ||| | | ||||| || |
Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGT---CAAGGTTCTTTTCAACACG 27900
Query 148355 CTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAGATCGCGAGCCTTCATATCCTC 148414
|||||| || ||||| || |||| | ||| | | |||||| || || | |||||
Sbjct 27899 CTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTC 27840
Query 148415 GGCACCCATATTGCGCTTT---AGATCCaaaaaagtaaaaaCGTCTGCGTGCCAAGGCTC 148471
|| || |||| || || | || ||||| || |||||||| |||||
Sbjct 27839 CTTTCCGTGGTT---CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTC 27783
Query 148472 GATGTATACGGTCATGGCGCCTT-TC-CTT-TTACCTCCTTGATCGACATGGCGTAGCA- 148527
|| ||| | || | || || || ||| ||||| |||||||| |||| || |||
Sbjct 27782 GAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCG-AGCGG 27724
Query 148528 TGCTATTAAAAACACGCAATGCAGGTCCCAATCCCGCCGCAGTT-CCGTTTGTGGATTCA 148586
|| | || ||||| || | ||| | | ||| | | |||| |||||||| ||
Sbjct 27723 TGTTGTTGAAAACCCGAAGCATAGGAACGATTCC-GTTGGAGTTTCCGTTTGTACCGGCA 27665
Query 148587 ATTTTACTATTGGTGGCGCGAATTTGAGTGA-CATTCAGGCCGATGCCGCCTCCGTGTTT 148645
|| | | | |||||||| ||| |||| |||| || ||||| || ||| ||| ||
Sbjct 27664 ATGTAAGCACCAGTGGCGCGGATTCT-GTGAACATTGAGTCCGATACCACCTGCGTTCTT 27606
Query 148646 AGATATCATGGCACAATCGTTGAGTGTTTTATAGATGCCGTTAATACTGTCCTCTTGAAT 148705
|| |||||||||||| || | || | ||||| || | ||| |||||||| | ||
Sbjct 27605 TGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCAT 27546
Query 148706 GTTAAGCAGGTAGCACGATGACATTTGAGGCATTTTCATGCCAGACGAAAATAGAGTTGG 148765
|| | ||| |||| || || | ||| | | | | |||| | ||| || |||||
Sbjct 27545 GTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGG 27486
Query 148766 ACTAGCGTGAGTGAACAGCTTTGCCCG-CATCAATCTATAGGATTCGATAGCGCTTTCGA 148824
||||| ||||| | |||| | |||||| | || | |||||| || || |
Sbjct 27485 TGAGGCGTGGGTGAAGTAC-TTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAA 27427
Query 148825 TGTCATCACCATGAATCTGTAGAGCTACACGCATCAGCATGTGTTGAGG 148873
| || || || || || | ||| |||||||| | ||| ||||| ||
Sbjct 27426 TATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGG 27378
>seq778
Length=242110
Score = 98.7 bits (108), Expect = 1e-15
Identities = 149/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828
|||||| | || || || || | || ||||| | ||||| | || | |||||
Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396
Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888
||||| ||||| | || || |||||| || || || || || || ||||| |||
Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456
Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948
|| | ||||||| || |||||| ||||| || |||| ||| | ||||||||||||||
Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAAC 99516
Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
|| ||||| || |||| | || |||||||
Sbjct 99517 ATCCAAAAGGAGAGTACTCTTCACTTGGTCCT 99548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478646897321520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |