Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 295 2e-74
seq634 109 1e-18
seq2036 89.7 1e-12
>seq2371
Length=131994
Score = 295 bits (326), Expect = 2e-74
Identities = 1121/1735 (65%), Gaps = 46/1735 (3%)
Strand=Plus/Plus
Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507
||||| || || |||||| | |||||||| ||| | || || || || |||| ||||
Sbjct 27372 GAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAG 27431
Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAA 363565
|| || || ||||| || || ||| | || | | ||| ||||| |||||| | ||||
Sbjct 27432 GCTGCCATCGAAACTTACAA-CTTG-ATGTCCAGCAAGTACTTCACCCACGCCTCACCAA 27489
Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625
|| | | |||||| || | | |||| | ||||| ||||| || | | ||||
Sbjct 27490 CACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGA 27549
Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685
|||| || ||| || ||||||| ||||| | |||| |||||| | ||||| ||||
Sbjct 27550 AGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGA 27609
Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATTCGC 363744
| ||||| || || || | | |||| | || || || | ||||||| |
Sbjct 27610 ACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGC-CACTGGTGCTTACATTGCC 27668
Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804
|| ||| ||| |||| || || | ||||| |||||||| || || |||| || ||
Sbjct 27669 GGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCT 27728
Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864
| || || || || ||||| ||||| || || || || || || ||||||||
Sbjct 27729 CGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCA 27788
Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924
|| |||||| |||| ||||| || || ||||| || ||| ||||| ||||| |
Sbjct 27789 TGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTT 27848
Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984
||||| |||||||| ||||| || || ||| || | || | || |||||||| || ||
Sbjct 27849 CGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 27908
Query 363985 GCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038
||||| ||| || | | ||||| | || ||||| ||| | ||||
Sbjct 27909 ------AAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGAC 27962
Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098
|| | |||||||| | | ||| | ||||| || || || || ||||| |||| ||
Sbjct 27963 GTCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGGGCCGC 28022
Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158
|||| || || || ||||| |||| | ||| | || | || | ||||| |||
Sbjct 28023 AAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGACTGGA 28082
Query 364159 ACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217
| ||||| | ||| | ||||| ||| | |||||||| ||| |||||| || | |||||
Sbjct 28083 A-ACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGG 28141
Query 364218 TACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276
||| || | | || | ||| | ||||| || ||| | |||||| || || || |||
Sbjct 28142 TACCATCC-GAAGCTCCAACTTGTGTACTGAAATTGTCGAATACTGTGCACCTGATGAGG 28200
Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTA 364330
||| || || ||| | || ||| | || || || | | ||| | |||| || |
Sbjct 28201 TTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACTGCCA 28260
Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT--CTCGA-CA 364387
||| |||| |||| | ||| | || || || || | | ||| || || ||
Sbjct 28261 CTTATGACTTCCAGAAGCTTCACGAGGT---CTGCCAAGTTGTCGTCAAGAACTTGAACA 28317
Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCAT 364446
|| ||||||| | || || || || | || || || || | | ||| | || ||
Sbjct 28318 AGATTATCGATATCAACTACTACCCTGTGCCCGAGGCAAGAAAGAGC-AATTTCCGCCAC 28376
Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506
| || |||| ||||||||| || || || ||||| | ||| || || | ||
Sbjct 28377 AGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTCCA 28436
Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566
|| || || || || || || || | | ||||| ||||| || || ||
Sbjct 28437 TTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTACCACGCT 28496
Query 364567 GCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626
|| |||||||||| || |||||||| | | || | || ||||| | ||
Sbjct 28497 GCTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACTTACCAAGGC 28556
Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686
|| ||| || |||| | |||| | ||| | ||| ||| || || | | |
Sbjct 28557 TCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGGGTGTTACACCTACGGATCTT 28616
Query 364687 TGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCC 364741
||| | |||| || ||| | | || | || ||||||| |||||| | |
Sbjct 28617 TGGGATTGGGCTA-GCTTAAAGCAGCAGATTGCTCAA-CATGGTATCCGCAACAGTTTGC 28674
Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801
|||| || || ||||| || || ||| || || || ||| |||||||||||
Sbjct 28675 TCGTC---GCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGATTCAACGAGTGCT 28731
Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861
|||| || | || ||| | || || || || |||||| | ||||| || | || |
Sbjct 28732 TCGAGCCATACACCTCCAACATCTACTCTCGACGTGTTCTTGCTGGAGAGTTCCAAGTTG 28791
Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921
| ||| | || |||||||||| || || |||||| || | |||||| |
Sbjct 28792 TCAATCCATGGCTTCTCAAGGATCTGGTTGATATGGGACTGTGGTCCGATAACATGAAAA 28851
Query 364922 ACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGA 364981
|| |||||| || | ||| || | || ||| ||||| | |||| ||| | |
Sbjct 28852 ACCGTATCATTGCTGACGGTGGATCCATTCAAAACGTTCCAAACATCCCAGCTGATATCA 28911
Query 364982 AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCG 365041
|| | ||||||| || || |||||||| || || || || || | ||||| ||||
Sbjct 28912 AGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCATCGTTCAGATGGCTGCCG 28971
Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101
| || ||||| || || ||| || || | ||| | ||||| | ||||||
Sbjct 28972 ACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCAACCA 29031
Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156
| ||| |||| ||||||||| || ||||| | ||||||||||| ||
Sbjct 29032 TGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTTAAGACTGG 29086
>seq634
Length=94567
Score = 109 bits (120), Expect = 1e-18
Identities = 107/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 65881 GTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAA 65940
||||||||||| ||| || |||||| |||||| ||||||| ||| ||||| |||
Sbjct 30692 GTTCCGTCATATTTGGCAATGACATCTTCGAGTGCCTTGACAAGACGACGTTGGATATAA 30633
Query 65941 CCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAA 66000
||| | | ||||| ||||| || ||||||| |||||||||||| |||| ||| ||
Sbjct 30632 CCAGTTTCAGCAGTCTTTACAGCAGTATCAATGAGACCTTCACGACCGGCCATGGCGTGG 30573
Query 66001 AAGAAAAACTCAGTCGGT 66018
||||||||||| || |||
Sbjct 30572 AAGAAAAACTCGGTTGGT 30555
>seq2036
Length=314316
Score = 89.7 bits (98), Expect = 1e-12
Identities = 149/215 (69%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488
|||||||| ||||| |||||||| | |||||| | ||| || | | || ||
Sbjct 236117 ATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTACCTTTGCT 236058
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||||| |||| ||||||| ||||| || || ||||| ||| | || |
Sbjct 236057 CAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCC 235998
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
||||| ||| | || || |||| | ||| | ||||| || || || || ||||| ||
Sbjct 235997 ATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATC 235938
Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643
||| ||||||||||| || ||||| || || ||
Sbjct 235937 TCCCGTGATGAGGGTCTCCACACCGACTTCGCATG 235903
Score = 84.2 bits (92), Expect = 6e-11
Identities = 117/164 (71%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850
||| ||| | ||||| || |||||||| | |||| ||||| ||| ||| ||| ||
Sbjct 235758 ATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAA 235699
Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910
|| | || ||||| || | ||||| || || || | ||||||||||| |||||
Sbjct 235698 GGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTT 235639
Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954
||| || | || | ||| |||||||| || ||||| |||| ||
Sbjct 235638 CGAGAAGCGTGTCGCTGATTACCAAAAGGCCGGTGTCATGGCTG 235595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303310332326162
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |