Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2371 295 2e-74 seq634 109 1e-18 seq2036 89.7 1e-12 >seq2371 Length=131994 Score = 295 bits (326), Expect = 2e-74 Identities = 1121/1735 (65%), Gaps = 46/1735 (3%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 ||||| || || |||||| | |||||||| ||| | || || || || |||| |||| Sbjct 27372 GAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATTGAG 27431 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCT-CGTGTA-TTCACGCACGCCACGCCAA 363565 || || || ||||| || || ||| | || | | ||| ||||| |||||| | |||| Sbjct 27432 GCTGCCATCGAAACTTACAA-CTTG-ATGTCCAGCAAGTACTTCACCCACGCCTCACCAA 27489 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 || | | |||||| || | | |||| | ||||| ||||| || | | |||| Sbjct 27490 CACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACATGA 27549 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 |||| || ||| || ||||||| ||||| | |||| |||||| | ||||| |||| Sbjct 27550 AGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAAGA 27609 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAG-TTACATTCGC 363744 | ||||| || || || | | |||| | || || || | ||||||| | Sbjct 27610 ACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGC-CACTGGTGCTTACATTGCC 27668 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || ||| ||| |||| || || | ||||| |||||||| || || |||| || || Sbjct 27669 GGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCGCT 27728 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | || || || || ||||| ||||| || || || || || || |||||||| Sbjct 27729 CGATATGTTGATCAAGGTGGTAACAAGCGACCTGGTGCTTTCGCCATCTACCTCGAGCCA 27788 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTG 363924 || |||||| |||| ||||| || || ||||| || ||| ||||| ||||| | Sbjct 27789 TGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGGAGGTT 27848 Query 363925 CGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG 363984 ||||| |||||||| ||||| || || ||| || | || | || |||||||| || || Sbjct 27849 CGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTGTTGAA 27908 Query 363985 GCAGGTAAGAAT------TGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGAT 364038 ||||| ||| || | | ||||| | || ||||| ||| | |||| Sbjct 27909 ------AAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGAC 27962 Query 364039 GTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT 364098 || | |||||||| | | ||| | ||||| || || || || ||||| |||| || Sbjct 27963 GTCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGAGGGCAAGGGCCGC 28022 Query 364099 AAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGA 364158 |||| || || || ||||| |||| | ||| | || | || | ||||| ||| Sbjct 28023 AAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGACTGGA 28082 Query 364159 ACACCCTAT-ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGG 364217 | ||||| | ||| | ||||| ||| | |||||||| ||| |||||| || | ||||| Sbjct 28083 A-ACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCTTGG 28141 Query 364218 TACAATTCAGCAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGA 364276 ||| || | | || | ||| | ||||| || ||| | |||||| || || || ||| Sbjct 28142 TACCATCC-GAAGCTCCAACTTGTGTACTGAAATTGTCGAATACTGTGCACCTGATGAGG 28200 Query 364277 CTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-----AAAAGA-TGGTA 364330 ||| || || ||| | || ||| | || || || | | ||| | |||| || | Sbjct 28201 TTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACTGCCA 28260 Query 364331 CTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT--CTCGA-CA 364387 ||| |||| |||| | ||| | || || || || | | ||| || || || Sbjct 28261 CTTATGACTTCCAGAAGCTTCACGAGGT---CTGCCAAGTTGTCGTCAAGAACTTGAACA 28317 Query 364388 AGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCC-GAGCGTTCTAATATGCGTCAT 364446 || ||||||| | || || || || | || || || || | | ||| | || || Sbjct 28318 AGATTATCGATATCAACTACTACCCTGTGCCCGAGGCAAGAAAGAGC-AATTTCCGCCAC 28376 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCA 364506 | || |||| ||||||||| || || || ||||| | ||| || || | || Sbjct 28377 AGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTTCCA 28436 Query 364507 TTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCC 364566 || || || || || || || || | | ||||| ||||| || || || Sbjct 28437 TTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTACCACGCT 28496 Query 364567 GCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTATGAGGGG 364626 || |||||||||| || |||||||| | | || | || ||||| | || Sbjct 28497 GCTTTGACTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACTTACCAAGGC 28556 Query 364627 TCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGA 364686 || ||| || |||| | |||| | ||| | ||| ||| || || | | | Sbjct 28557 TCACCTGCCTCCAAGGGCGAGCTCCAATATGACATGTGGGGTGTTACACCTACGGATCTT 28616 Query 364687 TGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACTCGCAAC---TCCC 364741 ||| | |||| || ||| | | || | || ||||||| |||||| | | Sbjct 28617 TGGGATTGGGCTA-GCTTAAAGCAGCAGATTGCTCAA-CATGGTATCCGCAACAGTTTGC 28674 Query 364742 TCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCT 364801 |||| || || ||||| || || ||| || || || ||| ||||||||||| Sbjct 28675 TCGTC---GCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGATTCAACGAGTGCT 28731 Query 364802 TCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAG 364861 |||| || | || ||| | || || || || |||||| | ||||| || | || | Sbjct 28732 TCGAGCCATACACCTCCAACATCTACTCTCGACGTGTTCTTGCTGGAGAGTTCCAAGTTG 28791 Query 364862 TTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGA 364921 | ||| | || |||||||||| || || |||||| || | |||||| | Sbjct 28792 TCAATCCATGGCTTCTCAAGGATCTGGTTGATATGGGACTGTGGTCCGATAACATGAAAA 28851 Query 364922 ACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGA 364981 || |||||| || | ||| || | || ||| ||||| | |||| ||| | | Sbjct 28852 ACCGTATCATTGCTGACGGTGGATCCATTCAAAACGTTCCAAACATCCCAGCTGATATCA 28911 Query 364982 AGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCCG 365041 || | ||||||| || || |||||||| || || || || || | ||||| |||| Sbjct 28912 AGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCATCGTTCAGATGGCTGCCG 28971 Query 365042 ATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCT 365101 | || ||||| || || ||| || || | ||| | ||||| | |||||| Sbjct 28972 ACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCCACATGAAGGATCCAACCA 29031 Query 365102 CCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGG 365156 | ||| |||| ||||||||| || ||||| | ||||||||||| || Sbjct 29032 TGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGGGTCTTAAGACTGG 29086 >seq634 Length=94567 Score = 109 bits (120), Expect = 1e-18 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 65881 GTTCCGTCATAATTGCACATATTATCTTCACTTGCCTTTACAAGACAACGCTGGATGTAA 65940 ||||||||||| ||| || |||||| |||||| ||||||| ||| ||||| ||| Sbjct 30692 GTTCCGTCATATTTGGCAATGACATCTTCGAGTGCCTTGACAAGACGACGTTGGATATAA 30633 Query 65941 CCACTGTTTGCAGTTTTTACCGCGGTATCAACGAGACCTTCACGCCCGGACATTGCAGAA 66000 ||| | | ||||| ||||| || ||||||| |||||||||||| |||| ||| || Sbjct 30632 CCAGTTTCAGCAGTCTTTACAGCAGTATCAATGAGACCTTCACGACCGGCCATGGCGTGG 30573 Query 66001 AAGAAAAACTCAGTCGGT 66018 ||||||||||| || ||| Sbjct 30572 AAGAAAAACTCGGTTGGT 30555 >seq2036 Length=314316 Score = 89.7 bits (98), Expect = 1e-12 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 22432 ATTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAA---CAATGAACGTTCATTCGCG 22488 |||||||| ||||| |||||||| | |||||| | ||| || | | || || Sbjct 236117 ATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGTCTACCTTTGCT 236058 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||||| |||| ||||||| ||||| || || ||||| ||| | || | Sbjct 236057 CAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCATCC 235998 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 ||||| ||| | || || |||| | ||| | ||||| || || || || ||||| || Sbjct 235997 ATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTGATC 235938 Query 22609 AGCCGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||| ||||||||||| || ||||| || || || Sbjct 235937 TCCCGTGATGAGGGTCTCCACACCGACTTCGCATG 235903 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAA 22850 ||| ||| | ||||| || |||||||| | |||| ||||| ||| ||| ||| || Sbjct 235758 ATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTTACAA 235699 Query 22851 CGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTCTT 22910 || | || ||||| || | ||||| || || || | ||||||||||| ||||| Sbjct 235698 GGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACTTCTT 235639 Query 22911 CGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATGGATG 22954 ||| || | || | ||| |||||||| || ||||| |||| || Sbjct 235638 CGAGAAGCGTGTCGCTGATTACCAAAAGGCCGGTGTCATGGCTG 235595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303310332326162