Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq245 140 2e-28 seq2018 87.8 1e-12 seq778 87.8 1e-12 seq1765 82.4 5e-11 >seq245 Length=8279 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1976 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2035 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2036 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2070 >seq2018 Length=38475 Score = 87.8 bits (96), Expect = 1e-12 Identities = 204/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246 ||||| ||| | |||||||| ||||||||| |||| || ||||| | ||||| | Sbjct 23864 ATGTGAAGGATCCCTTCTACCGATACAAAATGGAGCGCCTCCAATCCAAGATTGAGGGCA 23805 Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGG 6304 |||| |||||||| || ||||||||||||||| | | | | || ||| | | |||| Sbjct 23804 AGGGCAACGGTATCAAGACCGTCATTGTCAACCT--CAGCAGCGTTGCTGCGTCTCTCGC 23747 Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364 || || | | ||| | || || || || | ||| |||||||||||||| || | Sbjct 23746 TCGTCCGGGCGACTATGTCATCAAGTACTTTGGTTTCGAGCTTGGCGCTCAGAC-CAACT 23688 Query 6365 TGATCAC-AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGG 6423 | | | |||| || | || | ||||| | || | || ||||||| || | Sbjct 23687 CCAGCCCTGCCGACGATCGTTGGATTATCAACGGTGCCCACGAGGCTTCCAAGCTCCAAG 23628 Query 6424 ACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGA 6483 ||| | || ||||| ||| | ||||| || || | ||||| | ||||| |||| Sbjct 23627 ACTATTTGGATGGCTTCATTAACCGCTTTGTTCTCTGCAAGAAATGCAAGAACCCTGAGA 23568 Query 6484 CCG 6486 ||| Sbjct 23567 CCG 23565 >seq778 Length=242110 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| | ||||| || | |||||||||||||||||| |||||||| | ||| | Sbjct 99780 ACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACC 99721 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || || || || || || || | || |||||||| | || | || || || Sbjct 99720 ATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTT 99661 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| || ||| ||| ||||| | | || || | |||||||||||||| || Sbjct 99660 ATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGAT 99601 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || ||||| || || || || |||||||| Sbjct 99600 AGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| |||||||| ||||||||||| || || || || Sbjct 99565 TACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGC 99506 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || || | ||| || ||||| || || ||||| ||||| |||| | Sbjct 99505 TGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTG 99446 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| || ||||||||| | || || ||| | ||| | Sbjct 99445 GGATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGA 99386 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || || | || || ||||| || ||||| Sbjct 99385 CCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 >seq1765 Length=68846 Score = 82.4 bits (90), Expect = 5e-11 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG 25946 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8102 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334936623100121