Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq245 140 2e-28
seq2018 87.8 1e-12
seq778 87.8 1e-12
seq1765 82.4 5e-11
>seq245
Length=8279
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1976 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2035
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 2036 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2070
>seq2018
Length=38475
Score = 87.8 bits (96), Expect = 1e-12
Identities = 204/303 (67%), Gaps = 6/303 (2%)
Strand=Plus/Minus
Query 6187 ATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTA 6246
||||| ||| | |||||||| ||||||||| |||| || ||||| | ||||| |
Sbjct 23864 ATGTGAAGGATCCCTTCTACCGATACAAAATGGAGCGCCTCCAATCCAAGATTGAGGGCA 23805
Query 6247 AGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAA--GTCGCTAAGGCGCTCGG 6304
|||| |||||||| || ||||||||||||||| | | | | || ||| | | ||||
Sbjct 23804 AGGGCAACGGTATCAAGACCGTCATTGTCAACCT--CAGCAGCGTTGCTGCGTCTCTCGC 23747
Query 6305 ACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTT 6364
|| || | | ||| | || || || || | ||| |||||||||||||| || |
Sbjct 23746 TCGTCCGGGCGACTATGTCATCAAGTACTTTGGTTTCGAGCTTGGCGCTCAGAC-CAACT 23688
Query 6365 TGATCAC-AAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGG 6423
| | | |||| || | || | ||||| | || | || ||||||| || |
Sbjct 23687 CCAGCCCTGCCGACGATCGTTGGATTATCAACGGTGCCCACGAGGCTTCCAAGCTCCAAG 23628
Query 6424 ACTTACTTGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGA 6483
||| | || ||||| ||| | ||||| || || | ||||| | ||||| ||||
Sbjct 23627 ACTATTTGGATGGCTTCATTAACCGCTTTGTTCTCTGCAAGAAATGCAAGAACCCTGAGA 23568
Query 6484 CCG 6486
|||
Sbjct 23567 CCG 23565
>seq778
Length=242110
Score = 87.8 bits (96), Expect = 1e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161
||| | ||||| || | |||||||||||||||||| |||||||| | ||| |
Sbjct 99780 ACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACC 99721
Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221
|| || || || || || || || || | || |||||||| | || | || || ||
Sbjct 99720 ATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTT 99661
Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281
||| || ||| ||| ||||| | | || || | |||||||||||||| ||
Sbjct 99660 ATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGAT 99601
Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||| || || ||||| || || || || ||||||||
Sbjct 99600 AGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | ||||| |||||||| ||||||||||| || || || ||
Sbjct 99565 TACCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGC 99506
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| || | || || | ||| || ||||| || || ||||| ||||| |||| |
Sbjct 99505 TGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTG 99446
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| ||| || ||||||||| | || || ||| | ||| |
Sbjct 99445 GGATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGA 99386
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || || | || || ||||| || |||||
Sbjct 99385 CCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
>seq1765
Length=68846
Score = 82.4 bits (90), Expect = 5e-11
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG 25946
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8102 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG 8058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334936623100121
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |