Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2371 241 2e-58 seq2036 132 6e-26 >seq2371 Length=131994 Score = 241 bits (266), Expect = 2e-58 Identities = 1320/2076 (64%), Gaps = 50/2076 (2%) Strand=Plus/Minus Query 61840 CTTGTCCAA-TGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 61898 |||| ||| |||||| || ||||| || || || | | ||||| ||||||||||||| Sbjct 29145 CTTGATCAACTGTGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTC 29086 Query 61899 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 61958 | || || ||||| | |||| || ||||||||||| || | || | | Sbjct 29085 CAGTCTTAAGACCCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTG 29026 Query 61959 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62018 |||| || ||||| ||||| |||||| |||||| ||||| || || | ||| |||| Sbjct 29025 GATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAG 28966 Query 62019 CCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62078 |||| | | || || ||||| |||||||||| ||| || |||| ||| |||| Sbjct 28965 CCATCTGAACGATGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATAT 28906 Query 62079 CTTCTGGAAGGTTTGTA---TTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 62135 | |||| | ||||| | || |||||||||||||| || || || || | || || | Sbjct 28905 CAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCA 28846 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | | ||| ||| | | | || | | | | || || ||||| || |||| Sbjct 28845 TGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTT 28786 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 | || ||||||| | || | |||| ||| || || ||| || || || | ||| Sbjct 28785 GGAACTCTCCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACT 28726 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 | || ||| | ||||||| || ||||| |||||||| || || | ||||| | Sbjct 28725 CGTTGAATCCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGT 28666 Query 62316 TTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTT-CCCAATTCCAAAGATCCG 62372 | | | ||| ||||| | || | | |||| || | |||||| ||||||||||| Sbjct 28665 TGCGGATACC--ATGTTGAGCAATCTGCTGCTTTA-AGCTAGCCCAATCCCAAAGATCCG 28609 Query 62373 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACAT 62432 ||| ||| ||| || || || ||| || ||| | Sbjct 28608 TAGGTGTAACACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGT 28549 Query 62433 ATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAAT 62492 | || || |||| || | ||| || | || || || ||| ||| | Sbjct 28548 AAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGT 28489 Query 62493 AAATGGTTTCGAAGATCTTCTTATTTAGAT-CTTGCGCTTCCAGGCTATCAAATGGATAA 62551 |||||||||||||||| | | || || | |||| || || || || |||||| | Sbjct 28488 AAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTG-GCCTCTGGGGACTCGAATGGAAGA 28430 Query 62552 TTTAAGAG--AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62609 ||||| || ||| || || || | ||||| ||||||| | | |||||||| || | Sbjct 28429 CG-AAGAGCCAAGAAA-GCATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372 Query 62610 TCTTATTAGAGATTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 62668 ||| | |||| || || || | ||| || || || ||||| ||||| || || Sbjct 28371 GGAAATT-GCTCTTTCTTGCCTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTC 28313 Query 62669 AGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC--C 62724 | || |||| | |||| | || || | || || | || ||| | | || | Sbjct 28312 AAGTTCTTGACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTC 28253 Query 62725 ATCTATTACAAACATGTTC--AATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62782 ||| | | | ||||| | || | ||||||| || ||||| || ||||||| | Sbjct 28252 TTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCA 28193 Query 62783 GCATCCGCA-TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 62841 | | | || |||| | || ||||| || | || | |||||| || | ||| Sbjct 28192 GG-TGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATT 28134 Query 62842 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 | ||| || |||||| ||| || |||||||| ||||| ||||| || | ||||| || Sbjct 28133 CTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTC 28074 Query 62902 AATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCT 62961 | |||| || | || | | ||| | | | ||||| || | ||| | Sbjct 28073 GGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTC---TTGCGGCC 28017 Query 62962 CTTTTC-TCTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTC 63018 ||| | || |||||| ||||| ||||| ||||| || | || | | | Sbjct 28016 CTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGC 27957 Query 63019 CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTT 63078 || |||||||| |||| || |||||||| | ||| || || | | || || || Sbjct 27956 CAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTT 27897 Query 63079 CATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGT 63137 ||| |||||||| |||||||| || || || ||| ||||| | || | | ||||| | Sbjct 27896 CATGAAGAGATCTGGAATCCAGAGGGCGTAGAAA-AGATCACGGGCACGAACCTCCTCCT 27838 Query 63138 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 63197 |||| |||||| || ||||||||| | | || ||| | ||||| || || | || Sbjct 27837 TTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGT 27778 Query 63198 ATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 63257 | ||||| | | | ||||| || ||||| || || ||||| | |||| ||||||||| | Sbjct 27777 AGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGT 27718 Query 63258 TATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGC 63317 | |||| | | ||| |||| || || ||||| | || || || || | || || Sbjct 27717 TGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAG 27658 Query 63318 TTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 63375 ||| |||| || || | || |||| | || || || ||||| | || || || Sbjct 27657 CACCAGTGGCGCGGATTCTGTGAACATTGA--GTCCGATACCACCTGCGTTCTTTGAAAT 27600 Query 63376 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 63435 | || || || || || || ||||| || || || || || ||| |||||| | Sbjct 27599 CATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGAT 27540 Query 63436 TAGAAAACAGCTAGACATTTGGTGAC-GACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 || || || ||| | ||| || | | || || ||| ||| | || || || | Sbjct 27539 GAGGAAGCATGAAGAAAGTTG-TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGG 27481 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCC 63554 |||| || || | || || | | ||||| || || || || | || |||||| Sbjct 27480 CGTGGGTGAAGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCT 27421 Query 63555 ATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 63614 || ||||| || ||||||||||| | ||| || || || | ||| ||||||| Sbjct 27420 CGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGC 27361 Query 63615 TGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 63674 | | | | || ||| || | || || |||||||| || | ||| || Sbjct 27360 CATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTATTGGTAGTTAA 27301 Query 63675 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATC-C 63733 | || || ||||| | || | |||||||| | ||| | || | || ||| Sbjct 27300 AATCACGGTCGTAGACGATGGCGGAGTTGAGCTCGGCCTCGTGCTTCATGACACAATCGT 27241 Query 63734 ATGGTAATACTTG-AAATAATAG--GAAAATGTTTCCCATTTTTAGGATTGACATAGTTG 63790 ||| | | ||| || || | || ||| ||| |||| ||| |||||||| | | Sbjct 27240 ATGTT--TGTTTGCTGATCATTGGTGACAATTTTT--GATTTCGAGGGTTGACATAATGG 27185 Query 63791 AATAAATCCTCCATCACTTCACTA-AATAGtttttttGTTTCTTTGTGTAGATTTGATAC 63849 |||| || || || | | | ||| | || || |||| ||||| || || || || Sbjct 27184 TATAATTCGGAAATGAC-GCTCGAGAATTGCTTCTTGGTTTGCTTGTGGAGGTTCGAGAC 27126 Query 63850 GGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 63885 || ||||| || || || ||||||||||| ||||| Sbjct 27125 TGCAATTCTTGCTGCGAGGATGGCATAATCGGGATG 27090 >seq2036 Length=314316 Score = 132 bits (146), Expect = 6e-26 Identities = 296/443 (67%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| ||| | ||||| || ||||| || || || || || | | || || || Sbjct 235612 TTTTGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTC 235671 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| |||||||| |||| ||| || |||| || | | || | ||||| Sbjct 235672 TCCATGAAGTCGAATGGGTTGGCAACCTTGTAAACCTTCTCATTGCCGAG---AGAAAGG 235728 Query 32490 AAT---CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATA 32546 | | ||| |||||||| || || ||| ||||||| | |||||| || | | Sbjct 235729 AGAAGACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGA 235788 Query 32547 AGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATA 32606 || ||||||||| |||| | || ||||| ||||| ||| || || || || Sbjct 235789 AGCGCGCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATG 235848 Query 32607 ATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 32666 | | | |||| | | | || || ||| | || || || | | |||||| Sbjct 235849 ACTGCTTGGACTGCTGCCTTGCTTGGGCGATGCTTCAAGTGGGAGAAGAGAAGGCATGCG 235908 Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 || ||| ||| |||||||| || | || || |||||||| || || || || | | Sbjct 235909 AAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCC 235968 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 || ||||||||||| || | ||| || ||||| || || || ||| ||||| || || Sbjct 235969 ATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCC 236028 Query 32787 TCTACTGCCGCAAAGGCAATAAG 32809 || || || |||||||||| ||| Sbjct 236029 TCAACAGCAGCAAAGGCAACAAG 236051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633611478243600