Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq778 123 2e-23 seq1113 87.8 2e-12 seq2459 82.4 7e-11 >seq778 Length=242110 Score = 123 bits (136), Expect = 2e-23 Identities = 151/204 (74%), Gaps = 8/204 (4%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA- 25069 || ||||||||||| ||||| ||||||| |||| |||||||| || || || ||||| Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180 Query 25070 ---GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126 |||| || | || | ||| ||||| || || || ||||| ||||||||||| | Sbjct 99181 AACGTCA---AATCGAAGATTCAG-GACAAGGAGGGTATCCCACCAGACCAACAGCGCCT 99236 Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 ||| ||||| ||||| || | || || | |||||| | |||||||||||| || || Sbjct 99237 TATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAA 99296 Query 25187 AGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || || Sbjct 99297 GGAATCCACTCTGCACTTGGTTCT 99320 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||||||||| || || | |||||| | ||||| ||||| || Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| ||| ||| || || || || |||||||| || ||| Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || ||||| || || || |||| ||| || | |||||||||| Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744 Query 25179 ATTCAAAAAGA 25189 |||||||| || Sbjct 99745 ATTCAAAAGGA 99755 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| | ||||| || ||||||| | || || || || || Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| | || | ||| || || || || || ||||| ||||| Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAG-GATAAGGAGGGTATCCCACCCGACCA 99455 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| |||||||| ||| | || |||| || || | |||| || || Sbjct 99456 ACAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAA 99515 Query 25178 TATTCAAAAAGA 25189 || ||||| || Sbjct 99516 CATCCAAAAGGA 99527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 133/183 (73%), Gaps = 8/183 (4%) Strand=Plus/Plus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAA 25078 |||||||| ||||||| |||| |||||||| || ||||||||||| |||| | Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCA--AGA 98906 Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138 || || | ||| ||||| || || ||||| || |||||||| || |||| |||||||| Sbjct 98907 GC-AAGATTCA-GGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGG 98964 Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198 || || | || |||| ||||| | ||||||||| || || || || || || || Sbjct 98965 AAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCT 99024 Query 25199 ACA 25201 || Sbjct 99025 CCA 99027 >seq1113 Length=83002 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | || ||||| ||||||| |||| || || || ||||||||| Sbjct 57185 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTATC 57126 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| || || |||||||| ||||||||||| Sbjct 57125 GA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTT 57068 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || || || || || ||| | ||||||| |||||| || ||||| || || |||| Sbjct 57067 TGATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAA 57008 Query 25186 A 25186 | Sbjct 57007 A 57007 >seq2459 Length=125150 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090 ||||||| | || || ||||| || ||||| ||||| || || ||| || ||| Sbjct 17371 CCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGA--CAATGTCAAGTCCAAGATCCA 17314 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 ||||| || || |||||||| ||||||||||| | || ||||| || || ||| | || Sbjct 17313 GGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAGCAACTTGA 17254 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||| ||| || | || ||||| || || || || || || || ||| | || | Sbjct 17253 GGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTT 17194 Query 25211 AAGGCTAAGAGGAGGA 25226 | | ||| | |||||| Sbjct 17193 ACGTCTACGTGGAGGA 17178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433314316449665