Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq778 123 2e-23
seq1113 87.8 2e-12
seq2459 82.4 7e-11
>seq778
Length=242110
Score = 123 bits (136), Expect = 2e-23
Identities = 151/204 (74%), Gaps = 8/204 (4%)
Strand=Plus/Plus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA- 25069
|| ||||||||||| ||||| ||||||| |||| |||||||| || || || |||||
Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180
Query 25070 ---GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGAT 25126
|||| || | || | ||| ||||| || || || ||||| ||||||||||| |
Sbjct 99181 AACGTCA---AATCGAAGATTCAG-GACAAGGAGGGTATCCCACCAGACCAACAGCGCCT 99236
Query 25127 TATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
||| ||||| ||||| || | || || | |||||| | |||||||||||| || ||
Sbjct 99237 TATCTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAA 99296
Query 25187 AGAATCCACGCTACATTTAGTGCT 25210
|||||||| || || || || ||
Sbjct 99297 GGAATCCACTCTGCACTTGGTTCT 99320
Score = 114 bits (126), Expect = 1e-20
Identities = 140/191 (73%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||||||||| || || | |||||| | ||||| ||||| ||
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || | ||| ||| ||| || || || || |||||||| || |||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || ||||| || || || |||| ||| || | ||||||||||
Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744
Query 25179 ATTCAAAAAGA 25189
|||||||| ||
Sbjct 99745 ATTCAAAAGGA 99755
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| | ||||| || ||||||| | || || || || ||
Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| ||||| | || | ||| || || || || || ||||| |||||
Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAG-GATAAGGAGGGTATCCCACCCGACCA 99455
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||||| | ||||| |||||||| ||| | || |||| || || | |||| || ||
Sbjct 99456 ACAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAA 99515
Query 25178 TATTCAAAAAGA 25189
|| ||||| ||
Sbjct 99516 CATCCAAAAGGA 99527
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/183 (73%), Gaps = 8/183 (4%)
Strand=Plus/Plus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGA----GTCACTGAA 25078
|||||||| ||||||| |||| |||||||| || ||||||||||| |||| |
Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCA--AGA 98906
Query 25079 GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGG 25138
|| || | ||| ||||| || || ||||| || |||||||| || |||| ||||||||
Sbjct 98907 GC-AAGATTCA-GGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGG 98964
Query 25139 CAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCT 25198
|| || | || |||| ||||| | ||||||||| || || || || || || ||
Sbjct 98965 AAAGCAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGACTCT 99024
Query 25199 ACA 25201
||
Sbjct 99025 CCA 99027
>seq1113
Length=83002
Score = 87.8 bits (96), Expect = 2e-12
Identities = 129/181 (71%), Gaps = 4/181 (2%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| | || ||||| ||||||| |||| || || || |||||||||
Sbjct 57185 TTCGTCAAGACCCTCACGGGTAAGACCATCACCCTCGAGGTCGAATCTAGCGACACTATC 57126
Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125
|| || || ||| || ||| ||||| || || |||||||| |||||||||||
Sbjct 57125 GA--CAATGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTT 57068
Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185
| || || || || || ||| | ||||||| |||||| || ||||| || || ||||
Sbjct 57067 TGATCTTCGCTGGAAAGCAACTTGAAGATGGACGCACTCTGTCAGATTATAACATCCAAA 57008
Query 25186 A 25186
|
Sbjct 57007 A 57007
>seq2459
Length=125150
Score = 82.4 bits (90), Expect = 7e-11
Identities = 137/196 (70%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTG--AAGCAAAAAATCAC 25090
||||||| | || || ||||| || ||||| ||||| || || ||| || |||
Sbjct 17371 CCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGA--CAATGTCAAGTCCAAGATCCA 17314
Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150
||||| || || |||||||| ||||||||||| | || ||||| || || ||| | ||
Sbjct 17313 GGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAGCAACTTGA 17254
Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| ||| || | || ||||| || || || || || || || ||| | || |
Sbjct 17253 GGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCATCTCGTCTT 17194
Query 25211 AAGGCTAAGAGGAGGA 25226
| | ||| | ||||||
Sbjct 17193 ACGTCTACGTGGAGGA 17178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433314316449665
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |