Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq778 138 1e-27 seq2459 96.9 3e-15 >seq778 Length=242110 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290 || || ||||| || ||||| || |||| || || ||||| | |||||||| | ||| Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180 Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350 | ||||| || ||||| |||||||||||||| ||||| || ||||| || ||||| Sbjct 99181 AACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTATC 99240 Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410 ||||| ||||| ||| | ||||| ||||| | ||||||||||| || || || ||| Sbjct 99241 TTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGGAA 99300 Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| | || || ||| | ||| | || || ||| Sbjct 99301 TCCACTCTGCACTTGGTTCTCCGACTCCGTGGTGGT 99336 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || |||||||| ||||| || || || || |||| | ||||| || | | Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || |||| ||| || || || ||||||||||||||||| |||||| Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||||| |||||| || ||| || |||||||||| Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744 Query 22399 ATTCAAAAAGA 22409 |||||||| || Sbjct 99745 ATTCAAAAGGA 99755 Score = 118 bits (130), Expect = 9e-22 Identities = 130/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 |||||||| || |||| || || ||||| | | || || | ||| | |||| Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || || |||||||| ||||| |||||||| || Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||||| | |||||||||||||| || || || || || Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGAC 99021 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | ||||| || || ||||| | || || ||| | | Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || ||||| || ||||||||||| |||||||| ||| Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || |||||||| || | |||||| ||| ||| || ||| || ||| Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAAC 99516 Query 22399 ATTCAAAAAGA 22409 || ||||| || Sbjct 99517 ATCCAAAAGGA 99527 >seq2459 Length=125150 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || || | || ||| | ||| || |||| Sbjct 17381 ACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 17322 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| |||||||| || ||||| ||| | || ||||| || || Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || | |||||| || ||| | || || |||||||| || || || || ||| | ||| Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | || || || | || ||||| Sbjct 17201 CTCGTCTTACGTCTACGTGGAGG 17179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419714745907915