Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq778 138 1e-27
seq2459 96.9 3e-15
>seq778
Length=242110
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 22231 GTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGAC 22290
|| || ||||| || ||||| || |||| || || ||||| | |||||||| | |||
Sbjct 99121 GTCAAGACTTTGACTGGTAAGACCATCACCCTCGAGGTGGAGTCTTCCGATACCATCGAC 99180
Query 22291 GATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATA 22350
| ||||| || ||||| |||||||||||||| ||||| || ||||| || |||||
Sbjct 99181 AACGTCAAATCGAAGATTCAGGACAAGGAGGGTATCCCACCAGACCAACAGCGCCTTATC 99240
Query 22351 TTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAA 22410
||||| ||||| ||| | ||||| ||||| | ||||||||||| || || || |||
Sbjct 99241 TTTGCTGGCAAGCAGCTTGAGGACGGTCGCACACTTTCCGATTACAATATCCAGAAGGAA 99300
Query 22411 TCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||| | || || ||| | ||| | || || |||
Sbjct 99301 TCCACTCTGCACTTGGTTCTCCGACTCCGTGGTGGT 99336
Score = 120 bits (132), Expect = 3e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || |||||||| ||||| || || || || |||| | ||||| || | |
Sbjct 99565 ATGCAGATCTTTGTTAAGACTTTGACTGGCAAGACTATCACATTAGAAGTTGAGTCTTCG 99624
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | || || |||| ||| || || || ||||||||||||||||| ||||||
Sbjct 99625 GACACGATTGATAATGTCAAGTCAAAGATCCAGGATAAGGAGGGTATTCCACCAGATCAA 99684
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || | || || || ||||| ||||| |||||| || ||| || ||||||||||
Sbjct 99685 CAGCGATTGATCTTCGCAGGCAAGCAGTTGGAGGATGGTCGTACCCTCAGCGATTACAAC 99744
Query 22399 ATTCAAAAAGA 22409
|||||||| ||
Sbjct 99745 ATTCAAAAGGA 99755
Score = 118 bits (130), Expect = 9e-22
Identities = 130/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|||||||| || |||| || || ||||| | | || || | ||| | ||||
Sbjct 98849 ACCGGTAAGACCATCACCCTCGAGGTGGAGTCTTCGGACACTATCGACAACGTCAAGAGC 98908
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || || |||||||| ||||| |||||||| ||
Sbjct 98909 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAACAACGCCTTATCTTTGCCGGAAAG 98968
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | |||||| ||||||| | |||||||||||||| || || || || ||
Sbjct 98969 CAGCTCGAGGATGGCCGCACCCTTTCCGATTACAACATCCAGAAGGAGTCGAC 99021
Score = 105 bits (116), Expect = 6e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
|||||||| || || || ||| | ||||| || || ||||| | || || ||| | |
Sbjct 99337 ATGCAAATCTTCGTCAAGACTCTTACCGGAAAGACCATCACTTTGGAGGTCGAATCTTCA 99396
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| || | ||| || | || || ||||| || ||||||||||| |||||||| |||
Sbjct 99397 GACACAATCGACAATGTGAAGTCTAAGATTCAGGATAAGGAGGGTATCCCACCCGACCAA 99456
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || || |||||||| || | |||||| ||| ||| || ||| || |||
Sbjct 99457 CAGCGCCTCATTTTCGCCGGCAAGCAACTTGAGGATGGCCGAACCCTCAGCGACTATAAC 99516
Query 22399 ATTCAAAAAGA 22409
|| ||||| ||
Sbjct 99517 ATCCAAAAGGA 99527
>seq2459
Length=125150
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|| || || || |||| ||||| || || || | || ||| | ||| || ||||
Sbjct 17381 ACGGGCAAGACCATCACCCTTGAGGTTGAGTCCTCGGACACCATCGACAATGTCAAGTCC 17322
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| |||||||| || ||||| ||| | || ||||| || ||
Sbjct 17321 AAGATCCAGGACAAGGAGGGAATTCCACCGGACCAACAGCGTTTGATCTTTGCTGGAAAG 17262
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
|| | |||||| || ||| | || || |||||||| || || || || ||| | |||
Sbjct 17261 CAACTTGAGGATGGTCGTACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 17202
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
| || || || | || |||||
Sbjct 17201 CTCGTCTTACGTCTACGTGGAGG 17179
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419714745907915
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |