Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq778 176 8e-39 seq1113 150 3e-31 seq2459 123 5e-23 >seq778 Length=242110 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||||||| || || ||| |||||||||||||| ||| | Sbjct 99563 CCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTG 99504 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||| |||||||| ||||| | |||||||||||||| Sbjct 99503 AGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGG 99444 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| || ||||| ||||||| ||||| || Sbjct 99443 ATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACC 99384 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| ||||| || || ||||||||||| || ||||| Sbjct 99383 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 >seq1113 Length=83002 Score = 150 bits (166), Expect = 3e-31 Identities = 143/180 (79%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 ||||||||||||||||| || || || | |||||||| | ||||| || ||||| || Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 | | |||||||| |||||||| || |||||||| || ||||| | |||||| ||| Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 68394 ATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 || ||||| ||| ||||| || || | ||||||||| || |||||||||||||||||||| Sbjct 57127 ATAGTGTC-GCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185 >seq2459 Length=125150 Score = 123 bits (136), Expect = 5e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || || || | || || || ||||| || |||||||| || || || Sbjct 17178 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 17237 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | ||||| || | ||||| || || || || | | |||||||| ||||| Sbjct 17238 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGG 17297 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| || |||||||| || ||||| | |||||| ||||||||||| | || || || Sbjct 17298 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAAC 17357 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGA 68439 || | ||||||||| || ||||||| Sbjct 17358 CTCAAGGGTGATGGTCTTGCCCGTGA 17383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921592550954520