Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2371 159 7e-34 seq2036 154 3e-32 >seq2371 Length=131994 Score = 159 bits (176), Expect = 7e-34 Identities = 498/764 (65%), Gaps = 24/764 (3%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745 |||| |||||| || || ||||| || || || ||| | |||||| || || || | Sbjct 28219 GCCAAGTTGCAAACAGCAACCTCATC--AGGTGCACAGTATTCGACAATTTCAGTACACA 28162 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 ||| || |||||| || || | || || ||| ||| |||||| || |||| Sbjct 28161 AGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCT 28102 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865 |||| |||||||| || || |||||| || || |||||| || ||| || | Sbjct 28101 TGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCT 28042 Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925 ||||||| || |||| |||||||||| | |||||| ||||| |||| Sbjct 28041 TTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCT 27982 Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985 |||| ||| || |||| ||| | | || || ||| |||||||| | ||| Sbjct 27981 CGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCC 27922 Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045 | || | | | || | || ||||||||| || || ||||||||||| | ||| | Sbjct 27921 AGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAA 27862 Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105 | || | || | ||| ||| || |||||| | || || | || || || | Sbjct 27861 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 27802 Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165 | ||| ||||||| ||||| | ||||| |||| || || || |||||||| || || | Sbjct 27801 CATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTT 27742 Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | | || | | ||||||| |||||| | || || |||| || || ||||| Sbjct 27741 G----ATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTG 27686 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT- 245280 |||| ||||| || || ||||| || || || | | || | ||| || |||| Sbjct 27685 GAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGC---GCGGATTCTG-TGAACATT 27630 Query 245281 ---GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337 || | || || |||| ||| || || | ||| || |||| | ||||| || Sbjct 27629 GAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGAT 27570 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397 || || ||||||||| |||||||| || || ||||| || || || || | || | Sbjct 27569 ACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCT--GT 27512 Query 245398 GCTGCACGAGTTG--AACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 | || || || | || || || || ||||||||| ||||| Sbjct 27511 GGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTA 27468 >seq2036 Length=314316 Score = 154 bits (170), Expect = 3e-32 Identities = 355/518 (69%), Gaps = 15/518 (3%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691 || ||||| ||||||||||| || ||||| || |||||| | || | | | | || Sbjct 236123 CCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTAC 236065 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 || | | | || || |||||| | || || ||||| ||||||||| || | || Sbjct 236064 CTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 236005 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 ||| |||||||||||| | ||| || || || ||| | || || |||||||| |||| Sbjct 236004 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 235946 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | | ||| | | || ||||| || || | ||||| || ||||| || ||||| || Sbjct 235945 AGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CC 235889 Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928 || | | ||| |||| | |||| ||| |||| || ||||||| ||||| || || Sbjct 235888 ACTTGAAGCA-TCGCCCAAGCAAGGCAGC-AGTCCAAGCAGTCATCACCGAGGCTGTCGA 235831 Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988 ||| ||| | |||||| | || || | || || | || |||||||||| | | Sbjct 235830 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAA 235771 Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046 ||| ||| |||| ||||| ||| |||||||| | ||| || | | || | Sbjct 235770 CCTGATGAAGCAA-TACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATG 235712 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || | | ||||| | ||| |||||||| |||||||||||||| | | || Sbjct 235711 AGAAG-GTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGA 235653 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| ||||||||||| ||||| || ||||| Sbjct 235652 AAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCA 235615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944308615214160