Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 159 7e-34
seq2036 154 3e-32
>seq2371
Length=131994
Score = 159 bits (176), Expect = 7e-34
Identities = 498/764 (65%), Gaps = 24/764 (3%)
Strand=Plus/Minus
Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT--GTACTGGACAATCTCGGTGCAGA 244745
|||| |||||| || || ||||| || || || ||| | |||||| || || || |
Sbjct 28219 GCCAAGTTGCAAACAGCAACCTCATC--AGGTGCACAGTATTCGACAATTTCAGTACACA 28162
Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805
||| || |||||| || || | || || ||| ||| |||||| || ||||
Sbjct 28161 AGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCT 28102
Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGT 244865
|||| |||||||| || || |||||| || || |||||| || ||| || |
Sbjct 28101 TGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCT 28042
Query 244866 CCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCT 244925
||||||| || |||| |||||||||| | |||||| ||||| ||||
Sbjct 28041 TTTGGGCCTTGATGCTCTTGCGGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCT 27982
Query 244926 CGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCC 244985
|||| ||| || |||| ||| | | || || ||| |||||||| | |||
Sbjct 27981 CGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCC 27922
Query 244986 ACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGA 245045
| || | | | || | || ||||||||| || || ||||||||||| | ||| |
Sbjct 27921 AGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAA 27862
Query 245046 GGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGA 245105
| || | || | ||| ||| || |||||| | || || | || || || |
Sbjct 27861 GATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAA 27802
Query 245106 CGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCT 245165
| ||| ||||||| ||||| | ||||| |||| || || || |||||||| || || |
Sbjct 27801 CATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTT 27742
Query 245166 GGTCCACCATCCTCTCGAGCG----CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221
| | || | | ||||||| |||||| | || || |||| || || |||||
Sbjct 27741 G----ATCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTG 27686
Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT- 245280
|||| ||||| || || ||||| || || || | | || | ||| || ||||
Sbjct 27685 GAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGC---GCGGATTCTG-TGAACATT 27630
Query 245281 ---GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTAT 245337
|| | || || |||| ||| || || | ||| || |||| | ||||| ||
Sbjct 27629 GAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGAT 27570
Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGG 245397
|| || ||||||||| |||||||| || || ||||| || || || || | || |
Sbjct 27569 ACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCT--GT 27512
Query 245398 GCTGCACGAGTTG--AACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439
| || || || | || || || || ||||||||| |||||
Sbjct 27511 GGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTA 27468
>seq2036
Length=314316
Score = 154 bits (170), Expect = 3e-32
Identities = 355/518 (69%), Gaps = 15/518 (3%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACG-CAAC 42691
|| ||||| ||||||||||| || ||||| || |||||| | || | | | | ||
Sbjct 236123 CCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTAC 236065
Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751
|| | | | || || |||||| | || || ||||| ||||||||| || | ||
Sbjct 236064 CTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTT 236005
Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810
||| |||||||||||| | ||| || || || ||| | || || |||||||| ||||
Sbjct 236004 CGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTC-ATGGCTGGTCTTACCTTCTCCAACG 235946
Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870
| | ||| | | || ||||| || || | ||||| || ||||| || ||||| ||
Sbjct 235945 AGTTGATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CC 235889
Query 42871 ACCTCAGGCACAAGCCCTCG-AAGG-AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGA 42928
|| | | ||| |||| | |||| ||| |||| || ||||||| ||||| || ||
Sbjct 235888 ACTTGAAGCA-TCGCCCAAGCAAGGCAGC-AGTCCAAGCAGTCATCACCGAGGCTGTCGA 235831
Query 42929 GATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGA 42988
||| ||| | |||||| | || || | || || | || |||||||||| | |
Sbjct 235830 GATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAA 235771
Query 42989 CCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GTGCCAGATGGGTCTC 43046
||| ||| |||| ||||| ||| |||||||| | ||| || | | || |
Sbjct 235770 CCTGATGAAGCAA-TACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATG 235712
Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106
|| | | ||||| | ||| |||||||| |||||||||||||| | | ||
Sbjct 235711 AGAAG-GTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGA 235653
Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144
||||||||||| ||||||||||| ||||| || |||||
Sbjct 235652 AAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCA 235615
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944308615214160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |