Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1113 138 3e-27 seq778 134 3e-26 seq2036 95.1 3e-14 seq1826 93.3 1e-13 >seq1113 Length=83002 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 |||||||| ||||| || | || |||||||| ||||| | ||| ||||| ||||||||| Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 | ||||||||| ||| ||||| || || |||||||| || | || || || || Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 |||| ||||| ||||| || ||||| ||||| ||||| || || || ||||||||||| Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185 >seq778 Length=242110 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||||||||| | ||| || | |||| || || || |||||||| ||||||||| | Sbjct 99563 CCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTG 99504 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| || || ||||| || || |||||||| |||| Sbjct 99503 AGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGG 99444 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || |||||||| || || | ||||| || || || | || ||||| || Sbjct 99443 ATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACC 99384 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 99383 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337 Score = 125 bits (138), Expect = 2e-23 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||||| || || | || | ||| ||| || |||||||| || |||| Sbjct 99335 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 99276 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || ||||| || |||||||| |||| Sbjct 99275 AGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGG 99216 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || ||||| || |||| ||| ||||| || || | |||| || || || Sbjct 99215 ATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACC 99156 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 ||||| ||||| ||||| || |||| ||||||||||| Sbjct 99155 TCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGA 99119 Score = 118 bits (130), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | ||| || || || | ||||| || ||||| || || || ||| Sbjct 99794 TGTCCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCG 99735 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 ||| || || || || || || || || ||||||||||||| ||||||||| | Sbjct 99734 CTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGT 99675 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || ||||||||||| || | || || || || || | || || || Sbjct 99674 GGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCA 99615 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || |||| |||||| || || |||||||| Sbjct 99614 ACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 >seq2036 Length=314316 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176 |||||||| | ||| ||| | || || | | |||| ||||||||| | || |||| Sbjct 235822 AAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGA 235763 Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236 | ||||| || || || || || |||||| | || | ||||| ||||||| || | Sbjct 235762 AGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTT 235703 Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296 |||| || || |||| ||| ||||| || || |||| |||||||| |||| Sbjct 235702 ACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACT 235643 Query 269297 TCTTCGAAAAGCGTGTC 269313 ||||||| ||||||||| Sbjct 235642 TCTTCGAGAAGCGTGTC 235626 >seq1826 Length=200848 Score = 93.3 bits (102), Expect = 1e-13 Identities = 196/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 || || || |||||||||| | ||||| |||| | | || | | ||||||| | Sbjct 57821 ACAATCGGGGTGATGAACTCTTGGAAGAAATCTGGCAGCTTTAACAAACTAGGGAATTGG 57880 Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083 | || | || || || | ||||| || ||| |||| ||| |||| |||| | Sbjct 57881 CACTGAAGGAAATTGATCAGAAGACCTTTGATATGACTTCCATCATGATCCTGATCGGCC 57940 Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143 || ||||||| ||| ||||||||||| | |||||| ||||| |||| | || Sbjct 57941 ATAATCATCAAATGCCCGTAACGAAGACCCGTCGTGTCGTTGTATACTTGCTTGTGTTTC 58000 Query 326144 AGGCCGAGAATTTGTTTGAGCGCTGTG-ATTTCTTCGTTCTTCGTGATGCTTG--CCACG 326200 || ||||||| ||| |||| | | || ||||| | ||||||||||| ||| | | Sbjct 58001 AGACCGAGAAATTGCTTGA-TGTTTTGAATTTCGGCATTCTTCGTGAT--TTGATCAATA 58057 Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248 |||||| || ||||| | | ||| || ||||| ||||| || ||| Sbjct 58058 CTTGCATCTCGAACGTTGAGCAATTTACCTCGAAGTGGGAATACACCA 58105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179615238791698