Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq1113 138 3e-27
seq778 134 3e-26
seq2036 95.1 3e-14
seq1826 93.3 1e-13
>seq1113
Length=83002
Score = 138 bits (152), Expect = 3e-27
Identities = 138/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345
|||||||| ||||| || | || |||||||| ||||| | ||| ||||| |||||||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405
| ||||||||| ||| ||||| || || |||||||| || | || || || ||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464
|||| ||||| ||||| || ||||| ||||| ||||| || || || |||||||||||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
>seq778
Length=242110
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||||||||| | ||| || | |||| || || || |||||||| ||||||||| |
Sbjct 99563 CCACCGCGGAGACGAAGGACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTG 99504
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | ||| || || ||||| || || |||||||| ||||
Sbjct 99503 AGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGG 99444
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || |||||||| || || | ||||| || || || | || ||||| ||
Sbjct 99443 ATACCCTCCTTATCCTGAATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACC 99384
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| | ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 99383 TCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Score = 125 bits (138), Expect = 2e-23
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||||| || || | || | ||| ||| || |||||||| || ||||
Sbjct 99335 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 99276
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| ||||| || | || || || || ||||| || |||||||| ||||
Sbjct 99275 AGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGG 99216
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| || || || ||||| || |||| ||| ||||| || || | |||| || || ||
Sbjct 99215 ATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACC 99156
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463
||||| ||||| ||||| || |||| |||||||||||
Sbjct 99155 TCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGA 99119
Score = 118 bits (130), Expect = 3e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303
||||| || || || | ||| || || || | ||||| || ||||| || || || |||
Sbjct 99794 TGTCCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCG 99735
Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363
||| || || || || || || || || ||||||||||||| ||||||||| |
Sbjct 99734 CTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGT 99675
Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
|| || || || ||||||||||| || | || || || || || | || || ||
Sbjct 99674 GGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCA 99615
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||| | ||||| ||||| || |||| |||||| || || ||||||||
Sbjct 99614 ACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
>seq2036
Length=314316
Score = 95.1 bits (104), Expect = 3e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 269117 AAGAGTTCATTTGTGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGA 269176
|||||||| | ||| ||| | || || | | |||| ||||||||| | || ||||
Sbjct 235822 AAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGATGA 235763
Query 269177 ATCAATATATCGAATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGT 269236
| ||||| || || || || || |||||| | || | ||||| ||||||| || |
Sbjct 235762 AGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGGTTT 235703
Query 269237 ACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACT 269296
|||| || || |||| ||| ||||| || || |||| |||||||| ||||
Sbjct 235702 ACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACCAACT 235643
Query 269297 TCTTCGAAAAGCGTGTC 269313
||||||| |||||||||
Sbjct 235642 TCTTCGAGAAGCGTGTC 235626
>seq1826
Length=200848
Score = 93.3 bits (102), Expect = 1e-13
Identities = 196/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023
|| || || |||||||||| | ||||| |||| | | || | | ||||||| |
Sbjct 57821 ACAATCGGGGTGATGAACTCTTGGAAGAAATCTGGCAGCTTTAACAAACTAGGGAATTGG 57880
Query 326024 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 326083
| || | || || || | ||||| || ||| |||| ||| |||| |||| |
Sbjct 57881 CACTGAAGGAAATTGATCAGAAGACCTTTGATATGACTTCCATCATGATCCTGATCGGCC 57940
Query 326084 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 326143
|| ||||||| ||| ||||||||||| | |||||| ||||| |||| | ||
Sbjct 57941 ATAATCATCAAATGCCCGTAACGAAGACCCGTCGTGTCGTTGTATACTTGCTTGTGTTTC 58000
Query 326144 AGGCCGAGAATTTGTTTGAGCGCTGTG-ATTTCTTCGTTCTTCGTGATGCTTG--CCACG 326200
|| ||||||| ||| |||| | | || ||||| | ||||||||||| ||| | |
Sbjct 58001 AGACCGAGAAATTGCTTGA-TGTTTTGAATTTCGGCATTCTTCGTGAT--TTGATCAATA 58057
Query 326201 GATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCA 326248
|||||| || ||||| | | ||| || ||||| ||||| || |||
Sbjct 58058 CTTGCATCTCGAACGTTGAGCAATTTACCTCGAAGTGGGAATACACCA 58105
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179615238791698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |