Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq1826 87.8 4e-12
seq1898 86.0 1e-11
seq2036 84.2 5e-11
>seq1826
Length=200848
Score = 87.8 bits (96), Expect = 4e-12
Identities = 195/288 (68%), Gaps = 6/288 (2%)
Strand=Plus/Plus
Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144
|| || || |||||||||| | ||||| |||| | | || | | ||||||| |
Sbjct 57821 ACAATCGGGGTGATGAACTCTTGGAAGAAATCTGGCAGCTTTAACAAACTAGGGAATTGG 57880
Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204
| || | || || || | ||||| || ||| |||| ||| |||| |||| |
Sbjct 57881 CACTGAAGGAAATTGATCAGAAGACCTTTGATATGACTTCCATCATGATCCTGATCGGCC 57940
Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 298264
|| ||||||| ||| ||||||||||| | |||||| ||||| |||| | ||
Sbjct 57941 ATAATCATCAAATGCCCGTAACGAAGACCCGTCGTGTCGTTGTATACTTGCTTGTGTTTC 58000
Query 298265 AGGCCGAGAATTTGTTTGAGCGCTGTG-ATTTCTTCGTTCTTCGTGATGCTTG--CCACG 298321
|| ||||||| ||| |||| | | || ||||| | ||||||||||| ||| | |
Sbjct 58001 AGACCGAGAAATTGCTTGA-TGTTTTGAATTTCGGCATTCTTCGTGAT--TTGATCAATA 58057
Query 298322 GATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369
|||||| || || || | | ||| || ||||| ||||| || |||
Sbjct 58058 CTTGCATCTCGAACGTTGAGCAATTTACCTCGAAGTGGGAATACACCA 58105
>seq1898
Length=51649
Score = 86.0 bits (94), Expect = 1e-11
Identities = 164/241 (68%), Gaps = 3/241 (1%)
Strand=Plus/Plus
Query 330383 TGATAGAACGTCCCCATTTTACGCCATTGACAATCGACTCGAAATCATCGTTCAGGATGA 330442
||| || |||||||| | | | |||||||| || | ||| | ||||| || | |
Sbjct 43679 TGACAGCTCGTCCCCACATCATAGCCTTGACAATGGAGTTGAAGTTATCGTCCATCAAAA 43738
Query 330443 CGATGTCGGCTGATTCCTTTGCAATATCTGTTCCAC---TCCCCATGGCACATCCAACGT 330499
|||| | | || |||||||||| ||||| || | ||||| | | ||||| |
Sbjct 43739 TGATGGCAGATGCCTCCTTTGCAACCTCTGTACCTGCGATACCCATAGAGAAACCAACAT 43798
Query 330500 CTGCCTCCTTAAGAGCCGGAGCATCGTTAGCACCATCGCCACTCGATGCAACGACATGAC 330559
| || ||| ||||| ||||||||||||| |||||| ||| | ||||| | |
Sbjct 43799 CGGCGGTCTTGAGAGCAGGAGCATCGTTAGTACCATCACCAGTGACAGCAACAGTCTCGC 43858
Query 330560 CAAGATCTTTCATGAGCTGAACAAGTTCATACTTATCCTCTGGGGATGAACGAGCAAGAA 330619
| || || || | | ||| |||||| | ||||||||| ||| || ||||||||||
Sbjct 43859 CGAGTTCCTTGAGGCGCTTAACAAGAATACGCTTATCCTCGGGGCTGGATCGAGCAAGAA 43918
Query 330620 C 330620
|
Sbjct 43919 C 43919
>seq2036
Length=314316
Score = 84.2 bits (92), Expect = 5e-11
Identities = 160/236 (68%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562
||||||| || || || || | || | || ||| | || ||| |||| ||| ||
Sbjct 235849 TCATCACCGAGGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGC 235790
Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622
|| | |||||||| | | || ||| || ||||| || || || ||||| || ||
Sbjct 235789 TTCTCGGCATGAATGCCAACCTGATGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTC 235730
Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682
|| | | || || ||||||| || ||||| ||||| || | ||| ||||||
Sbjct 235729 TCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGA 235670
Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738
||| || || || || || ||||||||||| ||||||||| |||||| |||
Sbjct 235669 ACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAA 235614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102843387485850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |