Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq1826 87.8 4e-12 seq1898 86.0 1e-11 seq2036 84.2 5e-11 >seq1826 Length=200848 Score = 87.8 bits (96), Expect = 4e-12 Identities = 195/288 (68%), Gaps = 6/288 (2%) Strand=Plus/Plus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 || || || |||||||||| | ||||| |||| | | || | | ||||||| | Sbjct 57821 ACAATCGGGGTGATGAACTCTTGGAAGAAATCTGGCAGCTTTAACAAACTAGGGAATTGG 57880 Query 298145 CTATGGAAAAAGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGTC 298204 | || | || || || | ||||| || ||| |||| ||| |||| |||| | Sbjct 57881 CACTGAAGGAAATTGATCAGAAGACCTTTGATATGACTTCCATCATGATCCTGATCGGCC 57940 Query 298205 ATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACCGGTTTGA 298264 || ||||||| ||| ||||||||||| | |||||| ||||| |||| | || Sbjct 57941 ATAATCATCAAATGCCCGTAACGAAGACCCGTCGTGTCGTTGTATACTTGCTTGTGTTTC 58000 Query 298265 AGGCCGAGAATTTGTTTGAGCGCTGTG-ATTTCTTCGTTCTTCGTGATGCTTG--CCACG 298321 || ||||||| ||| |||| | | || ||||| | ||||||||||| ||| | | Sbjct 58001 AGACCGAGAAATTGCTTGA-TGTTTTGAATTTCGGCATTCTTCGTGAT--TTGATCAATA 58057 Query 298322 GATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCA 298369 |||||| || || || | | ||| || ||||| ||||| || ||| Sbjct 58058 CTTGCATCTCGAACGTTGAGCAATTTACCTCGAAGTGGGAATACACCA 58105 >seq1898 Length=51649 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 330383 TGATAGAACGTCCCCATTTTACGCCATTGACAATCGACTCGAAATCATCGTTCAGGATGA 330442 ||| || |||||||| | | | |||||||| || | ||| | ||||| || | | Sbjct 43679 TGACAGCTCGTCCCCACATCATAGCCTTGACAATGGAGTTGAAGTTATCGTCCATCAAAA 43738 Query 330443 CGATGTCGGCTGATTCCTTTGCAATATCTGTTCCAC---TCCCCATGGCACATCCAACGT 330499 |||| | | || |||||||||| ||||| || | ||||| | | ||||| | Sbjct 43739 TGATGGCAGATGCCTCCTTTGCAACCTCTGTACCTGCGATACCCATAGAGAAACCAACAT 43798 Query 330500 CTGCCTCCTTAAGAGCCGGAGCATCGTTAGCACCATCGCCACTCGATGCAACGACATGAC 330559 | || ||| ||||| ||||||||||||| |||||| ||| | ||||| | | Sbjct 43799 CGGCGGTCTTGAGAGCAGGAGCATCGTTAGTACCATCACCAGTGACAGCAACAGTCTCGC 43858 Query 330560 CAAGATCTTTCATGAGCTGAACAAGTTCATACTTATCCTCTGGGGATGAACGAGCAAGAA 330619 | || || || | | ||| |||||| | ||||||||| ||| || |||||||||| Sbjct 43859 CGAGTTCCTTGAGGCGCTTAACAAGAATACGCTTATCCTCGGGGCTGGATCGAGCAAGAA 43918 Query 330620 C 330620 | Sbjct 43919 C 43919 >seq2036 Length=314316 Score = 84.2 bits (92), Expect = 5e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 243503 TCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGC 243562 ||||||| || || || || | || | || ||| | || ||| |||| ||| || Sbjct 235849 TCATCACCGAGGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGC 235790 Query 243563 TTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTT 243622 || | |||||||| | | || ||| || ||||| || || || ||||| || || Sbjct 235789 TTCTCGGCATGAATGCCAACCTGATGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTC 235730 Query 243623 TCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGC 243682 || | | || || ||||||| || ||||| ||||| || | ||| |||||| Sbjct 235729 TCCTTTCTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGA 235670 Query 243683 TCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 ||| || || || || || ||||||||||| ||||||||| |||||| ||| Sbjct 235669 ACATCTCTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCGCTGATTACCAA 235614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102843387485850