Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq778 107 2e-18
>seq778
Length=242110
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
||||| | | ||| | ||||| ||||| ||||||||||||||||| ||||||||
Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || | |||||| || ||||| || | |||||| || || | |||
Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| | |||||| ||| ||| ||| |||| | | | |||||| || || ||
Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACT 99612
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| | ||||| || ||||| || | ||||| |||||||| |||||
Sbjct 99611 TCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
Score = 96.9 bits (106), Expect = 4e-15
Identities = 144/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| |||| ||| ||||| || ||||||||||| | || || || |||| ||
Sbjct 99317 ACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCA 99258
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| ||||| || || || ||||| ||||| | ||| | | |||||||||| ||
Sbjct 99257 AGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCC-TG 99199
Query 42120 ATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 42177
| | || | ||||| ||| | | | || ||| || ||||| |||| |||||||| |
Sbjct 99198 AATCTTCGATTTGA-CGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCT 99140
Query 42178 TGCCCGTTAGCGTCTTTAC 42196
| || || | ||||| ||
Sbjct 99139 TACCAGTCAAAGTCTTGAC 99121
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
||||| || | || ||||||||||| || || || || || || || | || ||
Sbjct 99545 ACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCA 99486
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| || ||||| ||||| ||||| ||||||| ||| | | |||||| ||| ||
Sbjct 99485 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCC-TG 99427
Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178
| | || | || | | | | ||||| ||||| || || | |||||||| ||
Sbjct 99426 AATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTT 99367
Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| || |||||||||||
Sbjct 99366 TCCGGTAAGAGTCTTGACGAAGATTTGCAT 99337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543195206695440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |