Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq778 96.9 3e-15
seq2371 89.7 5e-13
>seq778
Length=242110
Score = 96.9 bits (106), Expect = 3e-15
Identities = 136/191 (71%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| ||||| ||||| || || || ||| || | || ||||| ||||||||||| ||
Sbjct 99527 TCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAA 99468
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
||||| ||||| |||||||| || || || || || || || || || ||| |||
Sbjct 99467 ATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTG 99408
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | ||| || | || || || | ||| | |||||| ||||| | ||| || |||
Sbjct 99407 TCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACG 99348
Query 64433 AAAATTTGCAT 64443
|| ||||||||
Sbjct 99347 AAGATTTGCAT 99337
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312
|| ||||||||||||||||| || ||| || | || || | ||||||||| || |
Sbjct 99755 TCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAG 99696
Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372
|| | ||||| || || || ||||| || || || || || || ||| ||| |||
Sbjct 99695 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 99636
Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432
|| | || || | || ||||||| || | |||||||| |||||||| || ||
Sbjct 99635 TCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACA 99576
Query 64433 AAAATTTGCAT 64443
|| || |||||
Sbjct 99575 AAGATCTGCAT 99565
>seq2371
Length=131994
Score = 89.7 bits (98), Expect = 5e-13
Identities = 176/258 (68%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 155169 TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTT 155228
|||||||| | || | ||| || ||| || || || ||||| | ||||||
Sbjct 27637 TGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTG 27578
Query 155229 TCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAGATAATTG 155287
||||| || || | |||||||| || |||| ||| | || || || ||||| | |||
Sbjct 27577 TCGTAGATACCATCAATGCTGTCCTCCTTCAT-GTCGATGAGGAAGCATGAAGAAAGTTG 27519
Query 155288 AGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGC 155347
| || || || || ||||| | ||| || ||||| || || ||| |||
Sbjct 27518 TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGA 27459
Query 155348 GGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCAC 155407
| |||||||||||||||||||| || ||||| || |||||||| |||| || ||
Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399
Query 155408 GCGCATCAGCATGTGTTG 155425
||||| | ||| |||||
Sbjct 27398 ACGCATGATCATATGTTG 27381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499628617754040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |