Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq778 96.9 3e-15 seq2371 89.7 5e-13 >seq778 Length=242110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||| ||||| || || || ||| || | || ||||| ||||||||||| || Sbjct 99527 TCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAA 99468 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 ||||| ||||| |||||||| || || || || || || || || || ||| ||| Sbjct 99467 ATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTAGACTTCACATTG 99408 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | ||| || | || || || | ||| | |||||| ||||| | ||| || ||| Sbjct 99407 TCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTCTTGACG 99348 Query 64433 AAAATTTGCAT 64443 || |||||||| Sbjct 99347 AAGATTTGCAT 99337 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || ||||||||||||||||| || ||| || | || || | ||||||||| || | Sbjct 99755 TCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAG 99696 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACC 64372 || | ||||| || || || ||||| || || || || || || ||| ||| ||| Sbjct 99695 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 99636 Query 64373 TCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACG 64432 || | || || | || ||||||| || | |||||||| |||||||| || || Sbjct 99635 TCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACA 99576 Query 64433 AAAATTTGCAT 64443 || || ||||| Sbjct 99575 AAGATCTGCAT 99565 >seq2371 Length=131994 Score = 89.7 bits (98), Expect = 5e-13 Identities = 176/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 155169 TGAACATTAACGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTT 155228 |||||||| | || | ||| || ||| || || || ||||| | |||||| Sbjct 27637 TGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTG 27578 Query 155229 TCGTACATTCCTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAA-CACGAAGATAATTG 155287 ||||| || || | |||||||| || |||| ||| | || || || ||||| | ||| Sbjct 27577 TCGTAGATACCATCAATGCTGTCCTCCTTCAT-GTCGATGAGGAAGCATGAAGAAAGTTG 27519 Query 155288 AGGTTGAGGGCAGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGC 155347 | || || || || ||||| | ||| || ||||| || || ||| ||| Sbjct 27518 TGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAAGTACTTGCTGGA 27459 Query 155348 GGTTAAGTTGTAAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCAC 155407 | |||||||||||||||||||| || ||||| || |||||||| |||| || || Sbjct 27458 CATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGAC 27399 Query 155408 GCGCATCAGCATGTGTTG 155425 ||||| | ||| ||||| Sbjct 27398 ACGCATGATCATATGTTG 27381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499628617754040