Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 201 1e-46
>seq2371
Length=131994
Score = 201 bits (222), Expect = 1e-46
Identities = 470/704 (67%), Gaps = 4/704 (1%)
Strand=Plus/Plus
Query 93929 CACAGATGTCTTCGTGTTTCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987
|||| | ||||| || ||||| || ||| | |||| ||| ||| || || | |
Sbjct 27517 CACAACTTTCTTCATGCTTCCTCATCGAC-ATGAAGGAGGACAGCATTGATGGTATCTAC 27575
Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047
|||| | ||| ||||| | || ||||| |||| || || ||||| ||| |||
Sbjct 27576 GACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGACTCAATGTT 27635
Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107
||| | || |||| ||| | ||||| |||||| || || | ||||||||| ||
Sbjct 27636 CACAGAATCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCCAACGGAATC 27695
Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167
|| |||||||| ||||| ||||||||| | || || || || || || |||||| | |
Sbjct 27696 GTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGTGGTAACAAG 27755
Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227
| ||| ||||||| |||| |||||||| |||||||| || || | ||| ||
Sbjct 27756 CGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTCGAGTTCCTC 27815
Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287
||||| |||||||||||||| || || || | ||| | || || |||||||| |||
Sbjct 27816 GACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTCTACGCCCTC 27875
Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGT 94347
||| | ||||| || || ||||| || || || || ||| | ||||| | | ||
Sbjct 27876 TGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTGATGTGC 27935
Query 94348 CCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGC 94406
|| ||||| ||||| || || ||||||| | || | || || || | ||||| |
Sbjct 27936 CCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGG-TGACGAATTCGAGGCTTTGTACGA 27994
Query 94407 TCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCA 94466
||||| || ||||||||| | | ||| || | || ||||| ||| |
Sbjct 27995 GAAATACGAGTCTGAGGGCAAGGGCCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTC 28054
Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526
||| | || | || ||||| || | || | ||| | | |||||| || |||
Sbjct 28055 TATCCTCGAGGCTCAAACCGAGACTGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAA 28114
Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586
| ||| |||||| || | || || ||| ||||| || |||| || || ||
Sbjct 28115 CCGAAAGAGCAACCAAAAGAATCTTGGTACCATCCGAAGCTCCAACTTGTGTACTGAAAT 28174
Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630
|||||| || | | || || ||| ||||||| || ||| |||
Sbjct 28175 TGTCGAATACTGTGCACCTGATGAGGTTGCTGTTTGCAACTTGG 28218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494707177152360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |