Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2371 201 1e-46 >seq2371 Length=131994 Score = 201 bits (222), Expect = 1e-46 Identities = 470/704 (67%), Gaps = 4/704 (1%) Strand=Plus/Plus Query 93929 CACAGATGTCTTCGTGTTTCCTGAT-GACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 |||| | ||||| || ||||| || ||| | |||| ||| ||| || || | | Sbjct 27517 CACAACTTTCTTCATGCTTCCTCATCGAC-ATGAAGGAGGACAGCATTGATGGTATCTAC 27575 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 |||| | ||| ||||| | || ||||| |||| || || ||||| ||| ||| Sbjct 27576 GACACTTTGAAGATTTGTGCCATGATTTCAAAGAACGCAGGTGGTATCGGACTCAATGTT 27635 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 ||| | || |||| ||| | ||||| |||||| || || | ||||||||| || Sbjct 27636 CACAGAATCCGCGCCACTGGTGCTTACATTGCCGGTACAAACGGAAACTCCAACGGAATC 27695 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || |||||||| ||||| ||||||||| | || || || || || || |||||| | | Sbjct 27696 GTTCCTATGCTTCGGGTTTTCAACAACACCGCTCGATATGTTGATCAAGGTGGTAACAAG 27755 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| ||||||| |||| |||||||| |||||||| || || | ||| || Sbjct 27756 CGACCTGGTGCTTTCGCCATCTACCTCGAGCCATGGCACGCCGATGTTTTCGAGTTCCTC 27815 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 ||||| |||||||||||||| || || || | ||| | || || |||||||| ||| Sbjct 27816 GACCTCCGAAAGAACCACGGAAAGGAGGAGGTTCGTGCCCGTGATCTTTTCTACGCCCTC 27875 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGT 94347 ||| | ||||| || || ||||| || || || || ||| | ||||| | | || Sbjct 27876 TGGATTCCAGATCTCTTCATGAAGCGTGTTGAAAAGAACCTTGACTGGACATTGATGTGC 27935 Query 94348 CCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCG-TTTTGAAGACTTGTATGC 94406 || ||||| ||||| || || ||||||| | || | || || || | ||||| | Sbjct 27936 CCTAATGAGTGTCCTGGTTTGGCCGACGTCTACGG-TGACGAATTCGAGGCTTTGTACGA 27994 Query 94407 TCGTTACGAATCGCAGGGCAAGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCA 94466 ||||| || ||||||||| | | ||| || | || ||||| ||| | Sbjct 27995 GAAATACGAGTCTGAGGGCAAGGGCCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTC 28054 Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 ||| | || | || ||||| || | || | ||| | | |||||| || ||| Sbjct 28055 TATCCTCGAGGCTCAAACCGAGACTGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAA 28114 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | ||| |||||| || | || || ||| ||||| || |||| || || || Sbjct 28115 CCGAAAGAGCAACCAAAAGAATCTTGGTACCATCCGAAGCTCCAACTTGTGTACTGAAAT 28174 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGG 94630 |||||| || | | || || ||| ||||||| || ||| ||| Sbjct 28175 TGTCGAATACTGTGCACCTGATGAGGTTGCTGTTTGCAACTTGG 28218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494707177152360