Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1113 102 6e-17
seq778 91.5 1e-13
>seq1113
Length=83002
Score = 102 bits (112), Expect = 6e-17
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 14989 TTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATC 15048
||||| ||||| ||||| ||| | | | ||||| | ||| || |||||| | |||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 15049 AAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCT 15108
|||||||||||||| ||||||||| |||||||| || ||| || ||| | ||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 15109 ATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15167
||||| |||||| ||| || || | ||| ||||| ||||| || || || || || ||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
>seq778
Length=242110
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || ||||| ||| || ||||| ||||| || |||||||| ||| | || ||
Sbjct 99545 ACCAAGTGAAGAGTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCA 99486
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| ||| ||||| ||| | || | |||||||||||| ||| || || ||||| || |
Sbjct 99485 AGTTGCTTGCCGGCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGA 99426
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
|| || || ||| | || || || || | ||| || || || || ||||| ||
Sbjct 99425 ATCTTAGACTTCACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTT 99366
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| || ||||| || || || |||||||||
Sbjct 99365 CCGGTAAGAGTCTTGACGAAGATTTGCATA 99336
Score = 86.0 bits (94), Expect = 4e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 14986 TCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15045
|| ||||| ||||||||||||||||| | | | || || || || ||||| ||| |
Sbjct 99755 TCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAG 99696
Query 15046 ATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATT 15105
||||| |||||||| || |||||| || ||||| || || || || ||| |
Sbjct 99695 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 99636
Query 15106 TCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACA 15165
|| || || || | || || ||||| || || || || || |||| ||| || |||
Sbjct 99635 TCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACA 99576
Query 15166 AAAATTTGCATA 15177
|| || ||||||
Sbjct 99575 AAGATCTGCATA 99564
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357380714342435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |