Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq778 116 4e-21
seq2459 87.8 2e-12
seq2036 84.2 2e-11
seq1113 84.2 2e-11
>seq778
Length=242110
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981
||| |||||||| |||||||||| | || ||| ||| || | ||| || || ||| |
Sbjct 99756 CTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAA 99697
Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041
|||||||||||| ||||| || || || |||||||| ||| ||| || ||||| |
Sbjct 99696 GATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATT 99637
Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|| | ||||||| | ||| ||||| | || | || ||||| |||| ||| || ||
Sbjct 99636 ATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAAC 99577
Query 127102 AAAAATCTGCAT 127113
||| ||||||||
Sbjct 99576 AAAGATCTGCAT 99565
Score = 89.7 bits (98), Expect = 5e-13
Identities = 151/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||| | ||||| || | || || || || || ||||||||||||
Sbjct 99335 CCACCACGGAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAA 99276
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || ||||| |||| | ||||| || || || ||
Sbjct 99275 AGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGG 99216
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || ||| |||| |||| |||| ||| || | | ||| ||
Sbjct 99215 ATACCCTCCTTGTCCTGAATCTTCGATTTGACGTTG-TCGATGGTATCGGAAGACTCCAC 99157
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101
|||| ||| | || || || |||| ||| || ||
Sbjct 99156 CTCGAGGGTGATGGTCTTACCAGTCAAAGTCTTGAC 99121
Score = 82.4 bits (90), Expect = 7e-11
Identities = 124/174 (71%), Gaps = 2/174 (1%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||||||| | ||||| ||| || ||||| |||||
Sbjct 99021 GTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCG 98962
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
|| |||| | || || || || || || ||||||||||||||| || || ||||
Sbjct 98961 GCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 98902
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| ||||||| | ||| || |||| ||| | || || |||||
Sbjct 98901 ACGTTG-TCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 98849
>seq2459
Length=125150
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
||||| || |||| || || || | ||| | || ||||| || || || ||||| ||
Sbjct 17176 GCTCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCC 17235
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| || ||| ||| || || || |||||||| ||||||| ||||| || || ||
Sbjct 17236 GAAAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGT 17295
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063
|| || |||||||||||| ||| || ||||| | |||| |||||||| |||
Sbjct 17296 GGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCA 17355
Query 127064 ACTTCGACGGTCACCGTTTTGCCGGT 127089
|| || | ||| | || ||||| ||
Sbjct 17356 ACCTCAAGGGTGATGGTCTTGCCCGT 17381
>seq2036
Length=314316
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
|||| || |||| |||||| ||||| || | |||||||| || | | | |
Sbjct 235843 CCGAGGCTGTCGAGATTGAGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCG 235784
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| ||||| || | |||||| | ||||| || ||||||||||| || || ||| ||
Sbjct 235783 GCATGAATGCCAACCTGATGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTT 235724
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| || ||| ||||| | | || |||||||| || ||| | ||||| |
Sbjct 235723 CTCTCGGCAATGAGAAGGTTTACAAGGTTGCCAACCCATTCGACTTCATGGAGAACATCT 235664
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571
| |||| || ||||||||||| ||||||||||| ||||
Sbjct 235663 CTCTCGCCGGAAAGACCAACTTCTTCGAGAAGCGTGTCG 235625
>seq1113
Length=83002
Score = 84.2 bits (92), Expect = 2e-11
Identities = 126/179 (70%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 126926 TTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATC 126985
||||| || || ||||| || ||||| ||| || || || ||||||||| |||||
Sbjct 57007 TTTTGGATGTTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATC 57066
Query 126986 AATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCG 127045
|| ||||| || || || || || |||||||||||| ||| || ||||| | |||
Sbjct 57067 AAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 57126
Query 127046 ACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 127104
| ||||| || ||||| |||| ||| | || || || || || || || || ||
Sbjct 57127 ATAGTGTCGCTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475485399717840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |