Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2371 206 3e-48 seq2036 107 2e-18 >seq2371 Length=131994 Score = 206 bits (228), Expect = 3e-48 Identities = 1165/1840 (63%), Gaps = 39/1840 (2%) Strand=Plus/Minus Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585 ||||||| |||||| || ||| ||| ||||| |||||||| || ||||| || | Sbjct 29133 TGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTAAGAC 29074 Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645 || ||||||| | | |||||| || | ||| | |||||| | |||| Sbjct 29073 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGT 29014 Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705 || |||||| ||| |||||||| ||||| || || || || ||||| | || | Sbjct 29013 GGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGA 28954 Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763 | | | | ||| ||||||| ||||| |||| ||| ||| |||||| ||||||| Sbjct 28953 --TGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGAT 28896 Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823 | | ||||| || || ||||| | | || | | ||||| | | || Sbjct 28895 GTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTTATCGGA 28836 Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883 ||| || || || | ||||||| | || ||||||||| ||||| || Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTTGGAACTCTCC 28776 Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942 || || |||| ||| |||||||||| ||||||||||| |||||||| ||| | Sbjct 28775 AGCAAGAACACGTCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA-AT 28718 Query 115943 CCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001 |||||| || | ||| | ||| || ||||| || || | ||| | |||||||||| | Sbjct 28717 CCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATA 28658 Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCC 116059 || ||| | | ||| | | |||| || | || | | || | | Sbjct 28657 CCATGTTGAGCAATCTGCTGCTTTAAGCTAGCCCAATCCCAAA-GATCCGTAGGTGTAAC 28599 Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119 | ||||||| ||| | ||||| || | ||| || || || || | | ||||||| Sbjct 28598 AC-CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCAT 28540 Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179 ||| || | || || ||||| || | || | || ||||| || || || | Sbjct 28539 ATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTT 28480 Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC-ACAAA 116238 | || || | || | ||||||||| ||| || || | ||||| | | Sbjct 28479 CGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGACGAAGAGCCA 28420 Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 | ||| |||| || |||||||||||||| || |||| || | || | | ||| | Sbjct 28419 AGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTC 28361 Query 116299 TTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355 |||| || ||| ||| || || | || ||||||||| | | || | || ||| Sbjct 28360 TTTCTTGC---CTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTCTTG 28304 Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415 |||||| | || || |||||||| | | | ||| || || ||||| |||| Sbjct 28303 ACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCA 28244 Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||||| | || || || | || |||| || || |||| |||||| || | Sbjct 28243 ACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAG 28184 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 || || | |||||| |||||||| || || || ||||| || | |||||||| || Sbjct 28183 TATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTG 28124 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 |||| ||| || ||||||||||| ||||| | || | || ||||| ||||| | | Sbjct 28123 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCC 28064 Query 116596 TTGAGAATAGCCTTCCATACATCGGCGGC--TGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653 | ||| |||| | ||| | | ||| || | | ||| | | ||||| Sbjct 28063 TCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCG--GCCCTTGCCCTCAG 28006 Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTG 116713 |||||| || ||| | ||||| || || ||||| | || | | || || Sbjct 28005 ACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGAC 27946 Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773 || || || || | | | ||| | | || ||||| |||||||||||||| | Sbjct 27945 ACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGAT 27886 Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 |||| |||||||| || |||| ||||| || ||| | || || | || || || Sbjct 27885 CTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCT 27826 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 || | || | || || | | ||| |||||||| || || ||||| | |||| | Sbjct 27825 TTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAG 27766 Query 116894 -AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 || | |||| |||| | || | ||||| | || || ||| || || | Sbjct 27765 CACCAGGTCGCTTG---TTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCC 27709 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTG 117006 ||||||| |||| ||| || | || | || ||||| || ||| || || | || Sbjct 27708 GAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAG-TG 27650 Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066 || | || ||| | | | || ||||| ||||| |||||| || || || Sbjct 27649 GCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAA 27590 Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126 | | | | || ||||||| ||||| || ||| |||| | ||||||||||||| Sbjct 27589 ATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAT 27530 Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || | ||||| | |||||||||||| || || ||||||| |||||| |||| Sbjct 27529 GAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA- 27471 Query 117187 ATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAA 117244 || |||| ||||||| | ||| || || | | ||| ||| || || ||||| | Sbjct 27470 GTA-CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTA 27412 Query 117245 TACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 117304 | |||| | ||| ||||| | ||| | ||| || ||| | | |||||||| | Sbjct 27411 TTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGC 27352 Query 117305 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 |||| || ||| | |||||||| |||||| || Sbjct 27351 GGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTA 27312 >seq2036 Length=314316 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| ||||||||||| | || || |||||| ||||| | |||||| || Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||||||||||||||| || | || || ||| ||||||||| ||||| ||| Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| ||||| | ||||||| Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG 236065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613487330035560