Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 206 3e-48
seq2036 107 2e-18
>seq2371
Length=131994
Score = 206 bits (228), Expect = 3e-48
Identities = 1165/1840 (63%), Gaps = 39/1840 (2%)
Strand=Plus/Minus
Query 115526 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 115585
||||||| |||||| || ||| ||| ||||| |||||||| || ||||| || |
Sbjct 29133 TGAACTGGATGGGTGCCGAGGCAGCCATTGTACGGAGATAGTACATTCCAGTCTTAAGAC 29074
Query 115586 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGTGTTGGACTTTCCATGA 115645
|| ||||||| | | |||||| || | ||| | |||||| | ||||
Sbjct 29073 CCAACTTCCAGCCTGCGAAATGCATACTGGTAATCTTCCCCATGGTTGGATCCTTCATGT 29014
Query 115646 AGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATCA 115705
|| |||||| ||| |||||||| ||||| || || || || ||||| | || |
Sbjct 29013 GGATGTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGA 28954
Query 115706 CATCCTTCATCTTGA--TTTCCCACACAGTTCTGTAGAGGTTCTTAATATCATCTGGGAT 115763
| | | | ||| ||||||| ||||| |||| ||| ||| |||||| |||||||
Sbjct 28953 --TGGTACGTTGTGAGATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGAT 28896
Query 115764 ATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCATGAGATCCTTCATATCCTTTGA 115823
| | ||||| || || ||||| | | || | | ||||| | | ||
Sbjct 28895 GTTTGGAACGTTTTGAATGGATCCACCGTCAGCAATGATACGGTTTTTCATGTTATCGGA 28836
Query 115824 CCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTGCTTATTGACAACAACAAACTCACC 115883
||| || || || | ||||||| | || ||||||||| ||||| ||
Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGCCATGGATTGACAACTTGGAACTCTCC 28776
Query 115884 CGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 115942
|| || |||| ||| |||||||||| ||||||||||| |||||||| ||| |
Sbjct 28775 AGCAAGAACACGTCG-AGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGA-AT 28718
Query 115943 CCAAGATTTGGGCTG-TGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGA 116001
|||||| || | ||| | ||| || ||||| || || | ||| | |||||||||| |
Sbjct 28717 CCAAGAATTTGACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGGATA 28658
Query 116002 CCCACCCCCCTAATGCGTTCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTT--GTCTCCC 116059
|| ||| | | ||| | | |||| || | || | | || | |
Sbjct 28657 CCATGTTGAGCAATCTGCTGCTTTAAGCTAGCCCAATCCCAAA-GATCCGTAGGTGTAAC 28599
Query 116060 CCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCAT 116119
| ||||||| ||| | ||||| || | ||| || || || || | | |||||||
Sbjct 28598 AC-CCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGGTAAGTCTCAT 28540
Query 116120 ATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCT 116179
||| || | || || ||||| || | || | || ||||| || || || |
Sbjct 28539 ATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGGTAAATGGTTT 28480
Query 116180 CAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGC-ACAAA 116238
| || || | || | ||||||||| ||| || || | ||||| | |
Sbjct 28479 CGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGACGAAGAGCCA 28420
Query 116239 ATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298
| ||| |||| || |||||||||||||| || |||| || | || | | ||| |
Sbjct 28419 AGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGCGGAAATTGCTC 28361
Query 116299 TTTCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTG 116355
|||| || ||| ||| || || | || ||||||||| | | || | || |||
Sbjct 28360 TTTCTTGC---CTCGGGCACAGGGTAGTAGTTGATATCGATAATCTTGTTCAAGTTCTTG 28304
Query 116356 GTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG 116415
|||||| | || || |||||||| | | | ||| || || ||||| ||||
Sbjct 28303 ACGACAACTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATAAGTGGCAGTCTTCTCATCA 28244
Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475
||||| | || || || | || |||| || || |||| |||||| || |
Sbjct 28243 ACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGCAACCTCATCAGGTGCACAG 28184
Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535
|| || | |||||| |||||||| || || || ||||| || | |||||||| ||
Sbjct 28183 TATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTG 28124
Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595
|||| ||| || ||||||||||| ||||| | || | || ||||| ||||| | |
Sbjct 28123 CTCTTTCGGTTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCC 28064
Query 116596 TTGAGAATAGCCTTCCATACATCGGCGGC--TGGCACAGTGGCGTTGGCTCGCCCCTCCT 116653
| ||| |||| | ||| | | ||| || | | ||| | | |||||
Sbjct 28063 TCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGATGCTCTTGCG--GCCCTTGCCCTCAG 28006
Query 116654 CCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTG 116713
|||||| || ||| | ||||| || || ||||| | || | | || ||
Sbjct 28005 ACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGGAC 27946
Query 116714 CCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGT 116773
|| || || || | | | ||| | | || ||||| |||||||||||||| |
Sbjct 27945 ACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGAT 27886
Query 116774 CTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833
|||| |||||||| || |||| ||||| || ||| | || || | || || ||
Sbjct 27885 CTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCT 27826
Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893
|| | || | || || | | ||| |||||||| || || ||||| | |||| |
Sbjct 27825 TTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAG 27766
Query 116894 -AC-----CCCTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947
|| | |||| |||| | || | ||||| | || || ||| || || |
Sbjct 27765 CACCAGGTCGCTTG---TTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCC 27709
Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTG 117006
||||||| |||| ||| || | || | || ||||| || ||| || || | ||
Sbjct 27708 GAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAG-TG 27650
Query 117007 GCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCAC 117066
|| | || ||| | | | || ||||| ||||| |||||| || || ||
Sbjct 27649 GCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAA 27590
Query 117067 TCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAG 117126
| | | | || ||||||| ||||| || ||| |||| | |||||||||||||
Sbjct 27589 ATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAT 27530
Query 117127 CTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
|| | ||||| | |||||||||||| || || ||||||| |||||| ||||
Sbjct 27529 GAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA- 27471
Query 117187 ATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAA 117244
|| |||| ||||||| | ||| || || | | ||| ||| || || ||||| |
Sbjct 27470 GTA-CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCGCCGTGTA 27412
Query 117245 TACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCC 117304
| |||| | ||| ||||| | ||| | ||| || ||| | | |||||||| |
Sbjct 27411 TTCCGACAGCGACACGCATGATCATATGTTGTGGACGTTCGCAGATCTTGCCATCGAGGC 27352
Query 117305 TCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344
|||| || ||| | |||||||| |||||| ||
Sbjct 27351 GGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAAAGTA 27312
>seq2036
Length=314316
Score = 107 bits (118), Expect = 2e-18
Identities = 113/149 (76%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590
|||||||||||| ||||||||||| | || || |||||| ||||| | |||||| ||
Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976
Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650
||||||||||||||||| || | || || ||| ||||||||| ||||| |||
Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036
Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGG 127679
|| || |||| ||||| | |||||||
Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG 236065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613487330035560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |