Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2036 105 1e-17 seq2371 93.3 7e-14 >seq2036 Length=314316 Score = 105 bits (116), Expect = 1e-17 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973 || || ||||| || |||||| ||| || ||||| || || ||||| ||||||||||| Sbjct 235894 AAGAGAAGGCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 235953 Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033 | | | || || | ||||| |||||| || | ||| || |||| || |||| ||| Sbjct 235954 AAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCA 236013 Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093 || || ||||| ||||| || || ||||| || || || | | | |||| | | | Sbjct 236014 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCC 236073 Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 |||| ||| |||| | ||||| ||||||||||| Sbjct 236074 TTGTCTTGGATCCATCGGACAGCCCAATCAGCCTTCTT 236111 >seq2371 Length=131994 Score = 93.3 bits (102), Expect = 7e-14 Identities = 222/336 (66%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 205057 AGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGG 205116 |||||||||||| ||||| ||| | || || |||||| ||||| || || || Sbjct 28007 AGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGG 27948 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 ||| | || || ||||||| | ||| | | | || || | || ||| || || Sbjct 27947 ACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAG 27888 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236 || ||||| ||| |||| || ||||||||||| | || | || | ||| |||| Sbjct 27887 ATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 27828 Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296 |||| | ||| || | | || ||||||||||| ||||| | | | ||| | Sbjct 27827 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAA 27768 Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356 || || || | |||||| ||||| || || || |||| | ||||||||| || Sbjct 27767 AGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCG 27708 Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392 ||||| || || | ||||||| | | ||||| || Sbjct 27707 AAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGT 27672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795129446910960