Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2036 105 1e-17
seq2371 93.3 7e-14
>seq2036
Length=314316
Score = 105 bits (116), Expect = 1e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 159914 AACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGAC 159973
|| || ||||| || |||||| ||| || ||||| || || ||||| |||||||||||
Sbjct 235894 AAGAGAAGGCATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 235953
Query 159974 ATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCG 160033
| | | || || | ||||| |||||| || | ||| || |||| || |||| |||
Sbjct 235954 AAGGTAAGACCAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCA 236013
Query 160034 CTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTG 160093
|| || ||||| ||||| || || ||||| || || || | | | |||| | | |
Sbjct 236014 CTGAAGAAGATACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCC 236073
Query 160094 GTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131
|||| ||| |||| | ||||| |||||||||||
Sbjct 236074 TTGTCTTGGATCCATCGGACAGCCCAATCAGCCTTCTT 236111
>seq2371
Length=131994
Score = 93.3 bits (102), Expect = 7e-14
Identities = 222/336 (66%), Gaps = 0/336 (0%)
Strand=Plus/Minus
Query 205057 AGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGG 205116
|||||||||||| ||||| ||| | || || |||||| ||||| || || ||
Sbjct 28007 AGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAACCAGG 27948
Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176
||| | || || ||||||| | ||| | | | || || | || ||| || ||
Sbjct 27947 ACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAG 27888
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTT 205236
|| ||||| ||| |||| || ||||||||||| | || | || | ||| ||||
Sbjct 27887 ATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTT 27828
Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCAT 205296
|||| | ||| || | | || ||||||||||| ||||| | | | ||| |
Sbjct 27827 CTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAA 27768
Query 205297 TGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCG 205356
|| || || | |||||| ||||| || || || |||| | ||||||||| ||
Sbjct 27767 AGCACCAGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTGAAAACCCG 27708
Query 205357 CAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGT 205392
||||| || || | ||||||| | | ||||| ||
Sbjct 27707 AAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGT 27672
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795129446910960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |