Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq778 116 4e-21 >seq778 Length=242110 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||||| ||||| || ||||||||||| || ||||| ||| Sbjct 99791 CCTCCACGAAGACGAAGCACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTG 99732 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | ||||||||| ||||| ||||| ||||| || || | || Sbjct 99731 AGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGA 99672 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| |||||| ||||| | | | |||||| || || || Sbjct 99671 ATACCCTCCTTATCCTGGATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACT 99612 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| || ||||| |||| || ||||||||||| ||||| Sbjct 99611 TCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACAAAGATCTGCAT 99565 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 ||||||||||||||||| || |||||| || || || | || || || ||||||||| Sbjct 99533 GTACTCTCCTTTTGGATGTTATAGTCGCTGAGGGTTCGGCCATCCTCAAGTTGCTTGCCG 99474 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| || | |||||| ||||||| || | | |||||| ||| ||||| ||| Sbjct 99473 GCGAAAATGAGGCGCTGTTGGTCGGGTGGGATACCCTCCTTATCCTGAATCTTAGACTTC 99414 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | ||||| ||||| || |||| |||||||| || || || || || Sbjct 99413 ACATTGTCGATTGTGTCTGAAGATTCGACCTCCAAAGTGATGGTCTTTCCGGTAAGAGTC 99354 Query 46577 TTAACAAAGATTTGCAT 46593 || || ||||||||||| Sbjct 99353 TTGACGAAGATTTGCAT 99337 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||||||||| ||||| || ||||| |||| || ||||||||||| || || Sbjct 99299 TCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAG 99240 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||| ||||| | || | | |||||||||| |||||| |||| ||| Sbjct 99239 ATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTGAATCTTCGATTTGA-CGTT 99181 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | | || ||| || ||||| || | |||||||| || || |||| Sbjct 99180 GTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTTACCAGTCA 99131 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| ||||| || ||||| | || ||||||||||| ||||| || Sbjct 99016 CTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 98957 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||| || ||||| | || | || |||||||||| ||||| |||||| ||| Sbjct 98956 GATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGA-CGT 98898 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569 | | | ||||| || ||||| || | |||||||| || || || Sbjct 98897 TGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGT 98849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565220093341320