Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq491 149 5e-30 seq1401 113 3e-19 seq634 96.9 3e-14 >seq491 Length=100261 Score = 149 bits (164), Expect = 5e-30 Identities = 914/1452 (63%), Gaps = 21/1452 (1%) Strand=Plus/Plus Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || || ||||| || | ||| || ||||| |||||||| ||||| || | | |||||| Sbjct 73849 ATTCCGTTGGCGTCAACATCGAAGGTGACCTCAATTTGTGGGACACCACGTGGTGCAGGT 73908 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 ||||| || | | ||| | |||| | || || || || ||| || || ||| Sbjct 73909 GGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTGGTGCGTTGACGCTCA 73968 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 |||||||| | ||||||| || ||| ||| || || || | || | || || | Sbjct 73969 CCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCAGAGAAGGTGGAGAAGACCTCG 74028 Query 517454 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCT 517513 || || || || || || |||||||| |||| |||||||| |||||| || Sbjct 74029 GACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTCATTTGACCACCAGCA 74088 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT--TTTGAAGTTTTT 517571 || || | |||||| || | || | |||||| | |||| || | || | | || Sbjct 74089 GTCTCGATACCAAGGGACAATGGCGCGACATCGAGGAGGAGGATCTCGTTGGTGGACTTG 74148 Query 517572 CATCA-GTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCA 517630 | | || | || ||||| || || || | |||||||| ||||||||||| ||| Sbjct 74149 GAAGAGGTGTCTCCGGAGAGAATGGCAGCCTGGACGGCAGCACCGTATGCAACAGCCTCA 74208 Query 517631 TCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAG---TTGT 517687 ||||| || | | | ||| | | || || ||||| ||| | || || ||| Sbjct 74209 TCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAAGTAATCGGTAATGAGCTTTTGG 74268 Query 517688 CTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 517747 || ||| || ||||||| || ||||| || | || || || || |||| ||||| Sbjct 74269 ATT--CTT-GGGATACGAGTGGAACCTCCGACAAGGACGATCTCGTGAACCTTGGATTTG 74325 Query 517748 TCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAGACCCGCTCTAAACAAGTC 517806 || | || | ||| | || || || ||| | | | || || | || Sbjct 74326 TCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTGGTG-GTGGATCGGAAGAGATC 74384 Query 517807 TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCG 517864 || || || |||||| | || | ||| || || | || || || || || ||| Sbjct 74385 CTGGCAGAGCTCCTCGAATCTGGCACGAGT--GATGGAGGTGTAGAAGTCGATACCCTCG 74442 Query 517865 AACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGT 517924 || | ||| |||| ||| || | |||||| | || || || || | || ||||| || Sbjct 74443 AAGAGAGAGTCAATTTCGATGGAAGTTTGTGCAGAGGAGGAAAGGGTTCGCTTAGCTCGC 74502 Query 517925 TCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TCTGTTTTAT 517982 || ||||| || | || | || | || || ||| | ||| || | || | Sbjct 74503 TCGCATGCAGTGCGGAGACGACGAAGAGCACGGGC--GTTGGTAGAAAGGTCCTTCTTGT 74560 Query 517983 ATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTC 518042 || | ||||| || || | | ||||| | || || ||||| ||||| | Sbjct 74561 GCTTGCGTTTGAACTCGGAGACGAAGTGGTTAACAAGTCTGTTGTCGAAATCCTCACCAC 74620 Query 518043 CCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAA 518102 |||| | ||||| |||| || | | |||| || | || || || | | ||| | Sbjct 74621 CCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCTCCTCGATGGTCAAGA 74680 Query 518103 GAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTT 518162 | | ||||| ||||| ||||| | |||||| || || || || || || Sbjct 74681 GTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGTTTCGCTCACCCTCAA 74740 Query 518163 GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAA 518222 || || || ||||| || |||| || || || || || || || || || | | | Sbjct 74741 CCTTCTTGTCGAGACCGTAAGCAATGGCGGCTGCGGTAGGCTCGTTGATGATACGGAGGA 74800 Query 518223 CATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAAT 518282 | || |||||||| || || ||||| || |||||||| | |||||||||| | || | Sbjct 74801 CGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTTGTGAATCGGTGAAGT 74860 Query 518283 ATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTT 518342 | || || || || | ||||| | | || | ||||| || || || || | Sbjct 74861 AGGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGTAGGCCTCGGCAGTCT 74920 Query 518343 GTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTC-A 518401 | |||| || || ||||| || || |||| |||||| | ||||||| || Sbjct 74921 CTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGAATTGCTTCTTCTCGC 74980 Query 518402 TTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAG 518461 |||| | | | || | ||| || |||| | | || | || || || Sbjct 74981 CCTTGAACTCA-ATCTCGACGACTGGCTTTCCACCACGGTCGAGGACGGTGAAAGGGAAG 75039 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 | |||||||| | || || ||||| || | || ||||| || || ||||| Sbjct 75040 TGCTTCATATCAGCCTGCACCTCCTGGTCTGCGAACTTTCGTCCAATCAAACGCTTTGCG 75099 Query 518522 TCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGA 518581 || || | || |||| || || || || |||| | || || |||||||| |||||| Sbjct 75100 TCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTGCGGCATCTCCGATCAGA 75159 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 | || || ||||| || | ||| | || || || || || || || || || || || Sbjct 75160 CGCTCGGTATCTGTGAAGGCAACGAAGGAAGGGGTAGTTCGGTTTCCCTGGTCGTTTGCG 75219 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 ||||| |||| | | ||| | | | ||||||||| | || ||||| | ||| Sbjct 75220 ATAATCTCAATTCGATCATCACGGTAAATACCTACACAGGAGTAGGTGGTTCCAAGATCG 75279 Query 518702 ATACCAATAGCA 518713 ||||| || ||| Sbjct 75280 ATACCTATGGCA 75291 >seq1401 Length=76520 Score = 113 bits (124), Expect = 3e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 || ||||||||||| |||| |||||||||||||| || || | | ||||| ||| ||| Sbjct 32087 TTCTCAAGACCATAGGCAAGGGCAGCAGCAGTTGGCTCGTTGACTACTCTCAGAACGTTA 32146 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 ||||| |||||| || ||||| || |||||||| | |||||||||||| || || || Sbjct 32147 AGACCGGCAATTTGACCAGCATCCTTGGTGGCTTGACGTTGTGAATCGTTGAAGTAAGCT 32206 Query 518288 GGAACAGTAATAACGGC 518304 || || || | ||| || Sbjct 32207 GGGACTGTGACAACAGC 32223 >seq634 Length=94567 Score = 96.9 bits (106), Expect = 3e-14 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 671660 GAATTTTTCTTCCAAGTAATGGCAGGTCGTGAAGGTATTATTAATACGGCTATTAAAACT 671719 || ||||||||||| | ||||| |||||||||||| | ||| |||| ||| | || ||| Sbjct 30562 GAGTTTTTCTTCCACGCCATGGCCGGTCGTGAAGGTCTCATTGATACTGCTGTAAAGACT 30621 Query 671720 GCTGATACTGGTTATATTCAAAGAAAACTTGTTAAAATGCTCGAAGATATCAAACAAGAA 671779 ||||| ||||||||||| ||| | ||||| || ||||||||| ||| || Sbjct 30622 GCTGAAACTGGTTATATCCAACGTCGTCTTGTCAAGGCACTCGAAGATGTCATTGCCAAA 30681 Query 671780 TATGATGGTACAGTAAGAAAT 671800 ||||| || ||||| ||||| Sbjct 30682 TATGACGGAACAGTCCGAAAT 30702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780693826045246