Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq491 455 4e-123
seq2371 114 2e-20
seq1401 102 1e-16
>seq491
Length=100261
Score = 455 bits (504), Expect = 4e-123
Identities = 1062/1597 (66%), Gaps = 25/1597 (2%)
Strand=Plus/Plus
Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628
||||| ||| | || ||||| || || || | ||| |||||||| || || ||
Sbjct 73714 TCATCCTCAGCCTTGTACTTCTCGGCCTCAGCCAACATGCGCTCAATGTCCTCCTTGGAC 73773
Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688
|| | ||||| || || || || |||||| | ||| || || | |||| || |
Sbjct 73774 AAACGTCCCTTGTCGTTGGTGATGACAATCTTGTTGGACTTTCCGGTTCCCTTCTCGAGA 73833
Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748
||| || |||| || || || || ||||||||||| | || | ||||||||| |
Sbjct 73834 GCAGAGACGTTCATGATTCCGTTGGCGTCAACATCGAAGGTGACCTCAATTTGTGGGACA 73893
Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808
|| | ||||| | ||| ||||| || | || ||| |||| | | |||| ||| |
Sbjct 73894 CCACGTGGTGCAGGTGGGATACCAGTGAGCTCGAATTTACCCAAAAGGTTGTTGTCCTTG 73953
Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868
| | ||| ||||| || |||||| || ||| ||||||| || ||
Sbjct 73954 GTGCGTTGACGCTCACCCTCGAAGACTTGGATAAGCACACCAGGTTGGTTGTCAGAGAAG 74013
Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928
|| ||||||| | ||||| | ||| || || || ||||| || |||| | ||||
Sbjct 74014 GTGGAGAAGACCTCGGACTTCTTGGTTGGGATGGTGGTGTTTCTTGGGATAAGCTTGGTC 74073
Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA-- 6986
|| |||||| ||| |||| ||||| |||| || | || || | ||| | |
Sbjct 74074 ATTTGACCACCAGCAGTCTCGATACCAAGGGACAATGGCGCGACATCGAGGAGGAGGATC 74133
Query 6987 --------GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038
|| |||| | ||| || | || | | ||||| || ||||| |
Sbjct 74134 TCGTTGGTGGACTTGGA-AGAGGTGT------CTCCGGAGAGAATGGCAGCCTGGACGGC 74186
Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098
|| |||||||| || |||||||| ||||| || | || || | || || ||||| ||
Sbjct 74187 AGCACCGTATGCAACAGCCTCATCAGGGTTGATGGACTTGTTTGGCTCCTTTCCGTTGAA 74246
Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158
||||| | | | | ||| ||| | ||||| || || || || ||||| | |||||
Sbjct 74247 GTAATCGGTAATGAGCTTTTGGATTCTTGGGATACGAGTGGAACCTCCGACAAGGACGAT 74306
Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218
|| | || || ||||| || ||||| | ||| || ||||| || |
Sbjct 74307 CTCGTGAACCTTGGATTTGTCAATCTTGGCATCTGCGAGGACACGGTCGACTGGGGTGGT 74366
Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278
||||| | ||| || || ||||| || | ||||| || ||||| || ||
Sbjct 74367 GGTGGATCGGAAGAGATCCTGGCAGAGCTCCTCGAATCTGGCACGAGTGATGGAGGTGTA 74426
Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338
||| || | || ||| | | || |||||||| |||| |||||||| | || || |
Sbjct 74427 GAAGTCGATACCCTCGAAGAGAGAGTCAATTTCGATGGAAGTTTGTGCAGAGGAGGAAAG 74486
Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398
|||||||| || ||||| || || || || | ||||||||| ||||| | ||| ||
Sbjct 74487 GGTTCGCTTAGCTCGCTCGCATGCAGTGCGGAGACGACGAAGAGCACGGGCGTTGGTAGA 74546
Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGAAT 7457
|| || ||||| || || ||||| ||||| ||| |||||| || ||||| |
Sbjct 74547 AAGGTCCTTCTTGTGCTTGCGTTTGAACTCGG-AGACGAAGTGGTTAACAAGTCTGTTGT 74605
Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517
||||||| |||||||||||||| ||||| || ||||| | |||||||||||||||||
Sbjct 74606 CGAAATCCTCACCACCCAAGTGAGTATCACCTGCGGTGGACTTGACTTCAAAGATACCCT 74665
Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577
| || ||| | || | || ||||| || || || ||||| || ||||| ||||| ||||
Sbjct 74666 CCTCGATGGTCAAGAGTGAGACATCGAAAGTTCCTCCACCAAGATCAAAGATGAGAACGT 74725
Query 7578 TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
| || | || ||||| ||||||||||| || || || || || || || || |
Sbjct 74726 TTCGCTCACCCTCAACCTTCTTGTCGAGACCGTAAGCAATGGCGGCTGCGGTAGGCTCGT 74785
Query 7638 TAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTT 7697
| || ||||| || ||| || ||||| || | ||||| || || ||||| ||||
Sbjct 74786 TGATGATACGGAGGACGTTGAGACCAGCGATCAGACCGGCATCCTTGGTGGCTTGACGTT 74845
Query 7698 GCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGAT 7757
| |||||| | |||||||| ||||| || ||||| |||| |||| | ||| || |
Sbjct 74846 GTGAATCGGTGAAGTAGGCTGGGACTGTGACGACGGCGTTGTTGACGGTTCCACCAAGGT 74905
Query 7758 ACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAA 7817
| | || || | ||| |||| ||| | | ||| || || || ||||| | | |
Sbjct 74906 AGGCCTCGGCAGTCTCTCTCATCTTGACCAAGATCATGGAAGAGATTTCTTCTGGTGTGA 74965
Query 7818 ACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGA 7877
| || ||| | || || || || |||| || | | || || || || ||| | ||
Sbjct 74966 ATTGCTTCTTCTCGCCCTTGAACTCAATCTCGACGACTGGCTT-TC--CACCACGGTCGA 75022
Query 7878 TAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTC 7937
|| | | | | | |||||||| | || |||| ||||| | ||||||| ||
Sbjct 75023 GGACGGTGAAAGGGAAGTGCTTCATATCAGCCTGCACCTCCTGGTCTGCGAACTTTCGTC 75082
Query 7938 CGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCG 7997
| || | ||||||||| || || |||||||| |||||||||||| ||||||||| |
Sbjct 75083 CAATCAAACGCTTTGCGTCGAAGACTGTGTTGGCGGGGTTCATGGCGACTTGGTTCTTTG 75142
Query 7998 CCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTC 8057
| || || ||||| ||||| || || || || || || ||| | || ||||| ||||
Sbjct 75143 CGGCATCTCCGATCAGACGCTCGGTA---TCTGTGAAGGCAACGAAGGAAGGGGTAGTTC 75199
Query 8058 GATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACG 8117
| || || |||||||| || ||||| || | || || | | | | || || || |
Sbjct 75200 GGTTTCCCTGGTCGTTTGCGATAATCTCAATTCGATCATCACGGTAAATACCTACACAGG 75259
Query 8118 AATACGTTGTTCCTAAATCAATACCGATTGCTTGAGT 8154
| || || ||||| | ||| ||||| || || ||||
Sbjct 75260 AGTAGGTGGTTCCAAGATCGATACCTATGGCAGGAGT 75296
>seq2371
Length=131994
Score = 114 bits (126), Expect = 2e-20
Identities = 404/626 (65%), Gaps = 15/626 (2%)
Strand=Plus/Minus
Query 105454 CCTTCAGATTCGTATTTCTCGTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGA 105513
|| ||||| |||||||||||||| | | | || || || | |||||| ||||| | | |
Sbjct 28012 CCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACCGTAGACGTCGGCCAAA 27953
Query 105514 CCCTTTGCCTGATCAGGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATG 105573
|| || || ||| || | ||||| ||| | | | |||||| || ||||||
Sbjct 27952 CCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATG 27893
Query 105574 AACAAATCTGGAATCCACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCT 105633
|| | |||||||||||| | ||| | || || || || | |||| || | ||
Sbjct 27892 AAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCG 27833
Query 105634 TGATTCAAACGAATTTCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACT 105693
|| ||| || | ||||| || |||| || ||||||||||||||| || | ||||
Sbjct 27832 TGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATG 27773
Query 105694 GCAATAGACCCTTTACGACGC------CCCGCTTGATTGACATATCTTGCGGTTGAGTTA 105747
|| | || || | | ||| || |||||| ||||||| ||||| |||
Sbjct 27772 GCGAAAGCACC---AGGTCGCTTGTTACCACCTTGATCAACATATCGAGCGGTGTTGTTG 27716
Query 105748 TACACTCGTAACATTGGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGAT 105807
| || || | ||| |||| || || | ||| |||| ||||| || ||| | |
Sbjct 27715 AAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCA 27656
Query 105808 TTATTTGCACGTACATCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGC 105867
| | || || | |||||| | | || ||||| || || ||| ||
Sbjct 27655 CCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATG 27596
Query 105868 GCACACTCTTTTACTGTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGG 105927
||||| || | || ||||| ||||| || || || || ||||| | | || |||
Sbjct 27595 GCACAAATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGG 27536
Query 105928 AAACACGATGACATTTGTGGTCTG-GGTGTACCAGCATTGAACAGAGTTGGTGTTGCATG 105986
|| || || || | |||| | ||| |||||||||||| || || ||||||| || ||
Sbjct 27535 AAGCATGAAGAAAGTTGT-GCCTGTGGTGTACCAGCAGCAAAAAGTGTTGGTGAGGCGTG 27477
Query 105987 AATGAACAAACCTT--TCGATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGT 106044
|||| | ||| | || | | | ||| ||||| | | | |||||||| |
Sbjct 27476 GGTGAAGTA--CTTGCTGGACATCAAGTTGTAAGTTTCGATGGCAGCCTCAATATCCTCG 27419
Query 106045 CCATGAATACCAATAGCGACGCGCAT 106070
|| || || || | |||||| |||||
Sbjct 27418 CCGTGTATTCCGACAGCGACACGCAT 27393
>seq1401
Length=76520
Score = 102 bits (112), Expect = 1e-16
Identities = 235/341 (69%), Gaps = 16/341 (5%)
Strand=Plus/Plus
Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515
|||||||||||||||||||||||| ||||| || ||| | |||||||| || | |||
Sbjct 31951 ATCGAAATCTTCACCACCCAAGTGGGTATCTCCGTTGGTGGACTTGACTTCGAATACACC 32010
Query 7516 TCCTTCAATGTTTAACAAC-GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTA 7574
| | || | || ||| || | ||| || || || || ||||| || | || |
Sbjct 32011 TTTCTGGAT-CTCAAGAACAGAGATATCGAAGGTTCCTCCGCCCAGATCGTA---GACTG 32066
Query 7575 CGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTT 7634
|| | ||| | ||| | | ||| || ||||| || || | || || || ||||| |
Sbjct 32067 CGAT--GATC-TTGTCCTCATCCTTCTCAAGACCATAGGCAAGGGCAGCAGCAGTTGGCT 32123
Query 7635 CATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTG--CCGCATCTTTCGTCGCTTG 7692
| || | | | ||| ||| || || ||||| ||| | ||||| || || |||||
Sbjct 32124 CGTTGACTACTCTCAGAACGTTAAGACCGGCAAT--TTGACCAGCATCCTTGGTGGCTTG 32181
Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTT-TCTTAC 7751
||||| |||||||| ||||| || ||||| || || || |||| | ||| || |||
Sbjct 32182 ACGTTGTGAATCGTTGAAGTAAGCTGGGACTGTGACAACAGCGTTC-TGAATTGGCTTTG 32240
Query 7752 CGAGATACGATTCCGCGATATCTTTCAT-TTTGGTAAGAAC 7791
|||||| | || || | || ||||| ||| || |||||
Sbjct 32241 TGAGATATGCCTCAGCAGTCTCCTTCATCTTTTGT-AGAAC 32280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635112229636440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |