Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2371 271 9e-68 seq2036 123 3e-23 >seq2371 Length=131994 Score = 271 bits (300), Expect = 9e-68 Identities = 1180/1828 (65%), Gaps = 79/1828 (4%) Strand=Plus/Plus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || |||||| |||||||||||||| | || |||| | || ||||| | ||| Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 27368 Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662 ||| ||||| | ||| ||||||| ||||| |||| || || || || |||||| Sbjct 27369 TGCGAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATT 27428 Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACC 111721 || ||| | || || ||| || ||||||| | ||| |||| |||||| |||| Sbjct 27429 GAGGCTGCCATCGAAACTTACAACTTGATGTCCAGCAAGTAC-TTCACCCACGCCTCACC 27487 Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781 ||| || || |||||||||||| | ||| | || || ||||| || | | Sbjct 27488 AACACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACAT 27547 Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841 |||||||| || |||| || |||| |||| | | |||||| || ||||| Sbjct 27548 GAAGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAA 27607 Query 111842 GTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTA 111900 | || ||||||||||| | | | || || | |||| | || || ||| Sbjct 27608 GAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCA-CTGGTGCTTACATTG 27666 Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960 |||||||| || | || | || || |||| |||||||| || || ||| ||| | Sbjct 27667 CCGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCG 27726 Query 111961 CGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTG 112014 | || ||||| | |||| ||| | |||| || || |||| |||| || | Sbjct 27727 CTCGATATGTTGATCAAGGTGG---TAACAAGCGACCTGGTGCTTTCGCCATCTACCTCG 27783 Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074 ||||||||||||| ||| | | |||||||| || | || ||||| || | |||| Sbjct 27784 AGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGG 27843 Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134 ||| || ||| ||||| |||| ||| ||||||||||||||||||||||||||| | | Sbjct 27844 AGGTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTG 27903 Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194 |||| ||| | ||| | | | || || | || || ||| | |||| | Sbjct 27904 TTGAAAAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACG 27963 Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGC---GA 112251 | ||||| || || || || | ||| || |||||| || |||| | Sbjct 27964 TCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGA-----GGGCAAGGG 28018 Query 112252 CTGCGACGGTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 112309 | || | | || || | | ||| | |||| ||| || ||||||||||||| Sbjct 28019 CCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGAC 28078 Query 112310 TGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 112369 ||| | || | ||||||||||| || || || |||| |||||| || ||||||||| | Sbjct 28079 TGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCT 28138 Query 112370 GGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGAT 112427 ||| ||| || |||||| | ||||| ||||| | ||| ||| | || ||| Sbjct 28139 TGGTACCATCCGAAGCTCCAACTTGTGTACTGAAATTGTCGAA--TACTGTGCACCTGAT 28196 Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 112487 ||| ||||| || ||| | ||||| | |||||||| | ||||| ||| |||| Sbjct 28197 GAGGTTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACT 28256 Query 112488 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547 || | ||| | | || || ||||| || || |||| || ||| | ||| Sbjct 28257 GCCACTTATGACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAAC 28316 Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGA 112604 | |||| |||| || | ||||| || ||| || | || ||| | | Sbjct 28317 AAGATTATCGATATCAACTACTACCCTGTGCCCGAG---GCAAGAAAGAGCAATTTCCGC 28373 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 112661 ||| | || |||| ||| |||||||||||||| || |||| ||| | |||| ||| Sbjct 28374 CACAGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTT 28433 Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721 | |||| || ||| || || ||| | |||| | || || || || || || Sbjct 28434 C---CATTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTAC 28490 Query 112722 CACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 ||||| ||| |||| | ||| |||||||||| || || ||||| ||||||| || Sbjct 28491 CACGCTGCT-TTGA--CTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACT 28547 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837 | | || || || || || |||||| | ||| |||| ||| ||||||| || | || Sbjct 28548 TACCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACAC 28605 Query 112838 C-AAGCTTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895 | | | || | || |||| ||| | ||| | | || | | ||| | || Sbjct 28606 CTACGGATCTTTGGGATTGGGCTAGCT-TAAAGCAGCAGATTGCTCAACATGGTATCCGC 28664 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAA 112954 |||||| | | | || || |||||||| ||| ||| |||| |||||| | || Sbjct 28665 AACAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGAT-TCAA 28723 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGT 113013 || ||||| || || ||||| | |||||||| ||| || | || || ||||||| Sbjct 28724 CGAGTGCTTCGAGCCATACACCTCCAACATCTACTCT-CGACGTGTTCTTGCTGGAGAGT 28782 Query 113014 TTGTGATTGTCAA--CA-AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCA 113070 | ||||||| || || |||| |||| || || || || || |||||| Sbjct 28783 TCCAAGTTGTCAATCCATGGCTTCTCAAGGAT---CTGGTTGATATGGGACTGTGGTCCG 28839 Query 113071 AGGATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 113126 | | ||||| | | ||| || ||| ||||| ||||||||||| || | Sbjct 28840 ATAACATGAAAAACCGTATCATTGCTGA----CGGTGGATCCATTCAAAACGTTCCAAAC 28895 Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATG 113184 || |||| ||| || ||| | ||| || |||||||||| ||| | | | | Sbjct 28896 ATCCCAGCTGATATCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCA-- 28953 Query 113185 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTAT 113244 || || | ||||| || || |||||| |||||||||||| |||| ||||| | Sbjct 28954 TCGTTCAGATGGCTGCCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCC 29013 Query 113245 TCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304 |||| | |||||| ||| ||| | | |||||| | | |||||| || Sbjct 29014 ACATGAAGGATCCAACCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGG 29073 Query 113305 GTCTCAAAACGGGGATGTATTACCTCCG 113332 |||| || || || ||||| || ||||| Sbjct 29074 GTCTTAAGACTGGAATGTACTATCTCCG 29101 >seq2036 Length=314316 Score = 123 bits (136), Expect = 3e-23 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 102165 ||||||| || ||| | ||||| || ||||||||| | ||| | | |||| ||| Sbjct 236128 CAGTTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGT 236069 Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225 | | |||||||| | || || | || ||||| ||||||||||||||||||| || Sbjct 236068 C---TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTG 236012 Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 |||| ||| | || | ||| | |||||||| || |||||| | ||||| ||||| Sbjct 236011 GTTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCT 235952 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||| | ||||| ||||| ||||| |||||| Sbjct 235951 CCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 235917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620722295705520