Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 271 9e-68
seq2036 123 3e-23
>seq2371
Length=131994
Score = 271 bits (300), Expect = 9e-68
Identities = 1180/1828 (65%), Gaps = 79/1828 (4%)
Strand=Plus/Plus
Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605
|| |||||| |||||||||||||| | || |||| | || ||||| | |||
Sbjct 27312 TACTTTGGTTTCAAGACCCTCGAGCGATCATATCTCCTCCGCCTCGATGG---CAAGATC 27368
Query 111606 ---GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATT 111662
||| ||||| | ||| ||||||| ||||| |||| || || || || ||||||
Sbjct 27369 TGCGAACGTCCACAACATATGATCATGCGTGTCGCTGTCGGAATACACGGCGAGGATATT 27428
Query 111663 GATTCTGTTTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACC 111721
|| ||| | || || ||| || ||||||| | ||| |||| |||||| ||||
Sbjct 27429 GAGGCTGCCATCGAAACTTACAACTTGATGTCCAGCAAGTAC-TTCACCCACGCCTCACC 27487
Query 111722 AACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAA 111781
||| || || |||||||||||| | ||| | || || ||||| || | |
Sbjct 27488 AACACTTTTTGCTGCTGGTACACCACAGGCACAACTTTCTTCATGCTTCCTCATCGACAT 27547
Query 111782 CAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAA 111841
|||||||| || |||| || |||| |||| | | |||||| || |||||
Sbjct 27548 GAAGGAGGACAGCATTGATGGTATCTACGACACTTTGAAGATTTGTGCCATGATTTCAAA 27607
Query 111842 GTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGT-CTCGTATTA 111900
| || ||||||||||| | | | || || | |||| | || || |||
Sbjct 27608 GAACGCAGGTGGTATCGGACTCAATGTTCACAGAATCCGCGCCA-CTGGTGCTTACATTG 27666
Query 111901 GAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAG 111960
|||||||| || | || | || || |||| |||||||| || || ||| ||| |
Sbjct 27667 CCGGTACAAACGGAAACTCCAACGGAATCGTTCCTATGCTTCGGGTTTTCAACAACACCG 27726
Query 111961 CGCGCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTG 112014
| || ||||| | |||| ||| | |||| || || |||| |||| || |
Sbjct 27727 CTCGATATGTTGATCAAGGTGG---TAACAAGCGACCTGGTGCTTTCGCCATCTACCTCG 27783
Query 112015 AGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGG 112074
||||||||||||| ||| | | |||||||| || | || ||||| || | ||||
Sbjct 27784 AGCCATGGCACGCCGATGTTTTCGAGTTCCTCGACCTCCGAAAGAACCACGGAAAGGAGG 27843
Query 112075 AGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 112134
||| || ||| ||||| |||| ||| ||||||||||||||||||||||||||| | |
Sbjct 27844 AGGTTCGTGCCCGTGATCTTTTCTACGCCCTCTGGATTCCAGATCTCTTCATGAAGCGTG 27903
Query 112135 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATG 112194
|||| ||| | ||| | | | || || | || || ||| | |||| |
Sbjct 27904 TTGAAAAGAACCTTGACTGGACATTGATGTGCCCTAATGAGTGTCCTGGTTTGGCCGACG 27963
Query 112195 CCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGC---GA 112251
| ||||| || || || || | ||| || |||||| || |||| |
Sbjct 27964 TCTACGGTGACGAATTCGAGGCTTTGTACGAGAAATACGAGTCTGA-----GGGCAAGGG 28018
Query 112252 CTGCGACGGTGCCA--GCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGAC 112309
| || | | || || | | ||| | |||| ||| || |||||||||||||
Sbjct 28019 CCGCAAGAGCATCAAGGCCCAAAAGCTTTGGTACTCTATCCTCGAGGCTCAAACCGAGAC 28078
Query 112310 TGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTT 112369
||| | || | ||||||||||| || || || |||| |||||| || ||||||||| |
Sbjct 28079 TGGAAACCCTTTCATGCTTTACAAGGATGCTTGCAACCGAAAGAGCAACCAAAAGAATCT 28138
Query 112370 GGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAG-ACA-AAGAT 112427
||| ||| || |||||| | ||||| ||||| | ||| ||| | || |||
Sbjct 28139 TGGTACCATCCGAAGCTCCAACTTGTGTACTGAAATTGTCGAA--TACTGTGCACCTGAT 28196
Query 112428 GAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACA 112487
||| ||||| || ||| | ||||| | |||||||| | ||||| ||| ||||
Sbjct 28197 GAGGTTGCTGTTTGCAACTTGGCATCGCTGGCTCTCCCAACATATGTTGATGAGAAGACT 28256
Query 112488 AAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAAC 112547
|| | ||| | | || || ||||| || || |||| || ||| | |||
Sbjct 28257 GCCACTTATGACTTCCAGAAGCTTCACGAGGTCTGCCAAGTTGTCGTCAAGAACTTGAAC 28316
Query 112548 AGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGA 112604
| |||| |||| || | ||||| || ||| || | || ||| | |
Sbjct 28317 AAGATTATCGATATCAACTACTACCCTGTGCCCGAG---GCAAGAAAGAGCAATTTCCGC 28373
Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT---TCTTTGTCGC 112661
||| | || |||| ||| |||||||||||||| || |||| ||| | |||| |||
Sbjct 28374 CACAGACCTATTGCTCTTGGTGTCCAAGGTCTTGCTGATGCTTTCTTGGCTCTTCGTCTT 28433
Query 112662 CACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTAT 112721
| |||| || ||| || || ||| | |||| | || || || || || ||
Sbjct 28434 C---CATTCGAGTCCCCAGAGGCCAAGCACCTCAACATCCAAATCTTCGAAACCATTTAC 28490
Query 112722 CACGCCGCTCTTGAGGCGAGTTC---GGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778
||||| ||| |||| | ||| |||||||||| || || ||||| ||||||| ||
Sbjct 28491 CACGCTGCT-TTGA--CTGCTTCCATGGAGTTGGCAAAGATTCATGGTACATATGAGACT 28547
Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGAC 112837
| | || || || || || |||||| | ||| |||| ||| ||||||| || | ||
Sbjct 28548 TACCAAGGCTCACCTGCCTC-CAAGGGCGAGCTCCAATATGACATGTGGG-GTGTTACAC 28605
Query 112838 C-AAGCTTCACTACGACTGGG-ACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGT 112895
| | | || | || |||| ||| | ||| | | || | | ||| | ||
Sbjct 28606 CTACGGATCTTTGGGATTGGGCTAGCT-TAAAGCAGCAGATTGCTCAACATGGTATCCGC 28664
Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAA 112954
|||||| | | | || || |||||||| ||| ||| |||| |||||| | ||
Sbjct 28665 AACAGTTTGCTCGTCGCTCCTATGCCAACTGCCAGTACCAGTCAAATTCTTGGAT-TCAA 28723
Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGT 113013
|| ||||| || || ||||| | |||||||| ||| || | || || |||||||
Sbjct 28724 CGAGTGCTTCGAGCCATACACCTCCAACATCTACTCT-CGACGTGTTCTTGCTGGAGAGT 28782
Query 113014 TTGTGATTGTCAA--CA-AGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCA 113070
| ||||||| || || |||| |||| || || || || || ||||||
Sbjct 28783 TCCAAGTTGTCAATCCATGGCTTCTCAAGGAT---CTGGTTGATATGGGACTGTGGTCCG 28839
Query 113071 AGGATATGAAGGA---TCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGAT 113126
| | ||||| | | ||| || ||| ||||| ||||||||||| || |
Sbjct 28840 ATAACATGAAAAACCGTATCATTGCTGA----CGGTGGATCCATTCAAAACGTTCCAAAC 28895
Query 113127 ATTCCAGATGAAATTAAGAAGTTGTACCGCACAGTTTGGGAAA--TCAAGATGAAGGATG 113184
|| |||| ||| || ||| | ||| || |||||||||| ||| | | | |
Sbjct 28896 ATCCCAGCTGATATCAAGGCCCTTTACAAGACTGTTTGGGAAATCTCACAACGTACCA-- 28953
Query 113185 TCATTGACATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTAT 113244
|| || | ||||| || || |||||| |||||||||||| |||| ||||| |
Sbjct 28954 TCGTTCAGATGGCTGCCGACCGTGGTGCGTTCATTGATCAATCTCAATCAATGAACATCC 29013
Query 113245 TCATGGAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGG 113304
|||| | |||||| ||| ||| | | |||||| | | |||||| ||
Sbjct 29014 ACATGAAGGATCCAACCATGGGGAAGATTACCAGTATGCATTTCGCAGGCTGGAAGTTGG 29073
Query 113305 GTCTCAAAACGGGGATGTATTACCTCCG 113332
|||| || || || ||||| || |||||
Sbjct 29074 GTCTTAAGACTGGAATGTACTATCTCCG 29101
>seq2036
Length=314316
Score = 123 bits (136), Expect = 3e-23
Identities = 158/215 (73%), Gaps = 6/215 (3%)
Strand=Plus/Minus
Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAA--AGT 102165
||||||| || ||| | ||||| || ||||||||| | ||| | | |||| |||
Sbjct 236128 CAGTTCCTTGCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCAAGACAAGGAGT 236069
Query 102166 CGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTG 102225
| | |||||||| | || || | || ||||| ||||||||||||||||||| ||
Sbjct 236068 C---TACCTTTGCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTG 236012
Query 102226 GTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285
|||| ||| | || | ||| | |||||||| || |||||| | ||||| |||||
Sbjct 236011 GTTCTTTCGCATCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCT 235952
Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
|||||||| | ||||| ||||| ||||| ||||||
Sbjct 235951 CCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 235917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620722295705520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |