Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2371 176 5e-39 >seq2371 Length=131994 Score = 176 bits (194), Expect = 5e-39 Identities = 1103/1745 (63%), Gaps = 89/1745 (5%) Strand=Plus/Minus Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556 |||||| || ||||| ||||| ||||| |||||| || || ||||| | ||||| | Sbjct 29009 GTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGATGGT 28950 Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616 || | | | |||||||| ||||||||||| | |||||||||| | || |||| Sbjct 28949 ACGTTGTGAG---ATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATGTT 28893 Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGA 109673 | ||||||||| || ||||| | | || |||| | | ||||| | | || Sbjct 28892 TGGAACGTTTTGAATGGATCCACC-GTCAGCA--ATGATACGGTTTTTCATGTTATCGGA 28836 Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCA 109731 ||| || || | | ||||| | | ||| | || ||||| || || || Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGC--CATGGATTGACAACTTGGAACTCT 28778 Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791 |||||||| ||||| ||||||||| | ||||| || ||||| ||||| ||| Sbjct 28777 CCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAAT 28718 Query 109792 CCTAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGG 109848 || || ||||| | ||| | || || ||||| ||||| | ||| | |||||| ||| Sbjct 28717 CCAAGAATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGG 28661 Query 109849 AGACCCTTCGTCTTTACCCGCTCACGCATTGCGT---CCCAATCATAACGACCACTAAAT 109905 | ||| | | | ||| || || | ||||||| || || | || | Sbjct 28660 ATACCATGTTGAGCAATCTGCT---GCTTTAAGCTAGCCCAATCCCAAAGATCCGTAGGT 28604 Query 109906 TTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTG 109965 || || ||||||| || ||| || | |||| | ||||| || || | | Sbjct 28603 GTAA------CACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGG 28550 Query 109966 AAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGA 110025 || |||| || | || | || || |||||||| ||||| | || || || Sbjct 28549 TAAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGG 28490 Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGA 110085 || || || || || || || || | | | | |||| | ||||| |||||| Sbjct 28489 TAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGA 28430 Query 110086 CCACAAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGC------ 110137 | | | || || ||| |||| || ||||| || ||||| ||| |||| || | Sbjct 28429 CGA-AGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372 Query 110138 -GA---TGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATG 110193 || |||| | || || ||| ||| | ||||| ||||| ||||| Sbjct 28371 GGAAATTGCTCTTTCTT---GCCTCGGGCA-------CAGGGTAGTAGTTGATATCGATA 28322 Query 110194 ACCCGATTGAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAA 110252 | | || | ||||| ||| ||| | || || || || || | | | || | Sbjct 28321 ATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATA 28263 Query 110253 CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGA 110312 || |||| || || |||||| | |||||||| | || || | ||||| |||| Sbjct 28262 AGTGGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGC 28203 Query 110313 AGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGAC 110372 | ||| || | |||||| | |||||| |||||||||||||| || ||| Sbjct 28202 AACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGT 28143 Query 110373 ACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGG 110431 ||| | ||||| || || | ||| | |||||| |||||||| || |||||| | ||| Sbjct 28142 ACCAAGATTCTTTTGGTTGCTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGT 28084 Query 110432 TACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG 110491 | ||||| || || || | || ||| || | | ||| | | ||| || || Sbjct 28083 TTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGA----TG 28028 Query 110492 CGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCC 110546 | | ||| | |||| |||| |||||| || |||||| |||| ||||| | || Sbjct 28027 CTCTTGCG-GCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACC 27969 Query 110547 GTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTC 110606 ||| || || | | ||| || | || || | | | ||| | || Sbjct 27968 GTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTT 27909 Query 110607 CTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACG 110666 ||||| | ||||||||| || || |||||||| | || ||||||| |||||| ||| Sbjct 27908 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACG 27849 Query 110667 AGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726 | |||| || | || ||||| || || || | || || | | ||| | |||||| Sbjct 27848 AACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCA 27789 Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATA 110780 ||| ||||| |||| |||| | || | | || ||| | || | |||||| Sbjct 27788 TGGCTCGAGGTAGATGGCGAAAGCACC---AGGTCGCTTGTTACCACCTTGATCAACATA 27732 Query 110781 GCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGT 110840 || || ||| ||||| |||| |||||||||| ||||| | ||| | || ||||| Sbjct 27731 TCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGT 27672 Query 110841 ACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCG 110899 ||| ||| | | || | |||| || || ||| | || | || |||||||| | Sbjct 27671 ACCGGCAATGTAAGCAC-CAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTG 27613 Query 110900 CCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958 | ||| ||| |||| | ||| | | || | || ||||||||||| || Sbjct 27612 CGTTCTTTGAAATCATGGCACAAATCT-TCAAAGTGTCGTAGATACCATCAATGCTGTCC 27554 Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018 |||| || | || || ||||| ||||| | || | | || || || ||| || Sbjct 27553 TCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAA 27494 Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTG 111076 ||||| |||| || || ||| || |||| ||||||| |||||| || |||| | Sbjct 27493 AGTGTTGGTGAGGCGTGGGTGA--AGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGG 27436 Query 111077 CGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCG 111136 | | | ||| | ||||| || || | || || ||||||| ||||| ||| || Sbjct 27435 CAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGAC 27376 Query 111137 TTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAA 111196 |||| | ||| ||||| | || | || || ||| |||||||||| ||||| Sbjct 27375 GTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAA 27316 Query 111197 AGTAT 111201 ||||| Sbjct 27315 AGTAT 27311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588956924539800