Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 176 5e-39
>seq2371
Length=131994
Score = 176 bits (194), Expect = 5e-39
Identities = 1103/1745 (63%), Gaps = 89/1745 (5%)
Strand=Plus/Minus
Query 109500 GTTCATCGACTGAGACTGATCGATGAATCGACCACGATCAGCCGCCATGT---CGATGAT 109556
|||||| || ||||| ||||| ||||| |||||| || || ||||| | ||||| |
Sbjct 29009 GTTCATTGATTGAGATTGATCAATGAACGCACCACGGTCGGCAGCCATCTGAACGATGGT 28950
Query 109557 ACACTTTTGGCTAATTTCCCAGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTC 109616
|| | | | |||||||| ||||||||||| | |||||||||| | || ||||
Sbjct 28949 ACGTTGTGAG---ATTTCCCAAACAGTCTTGTAAAGGGCCTTGATATCAGCTGGGATGTT 28893
Query 109617 CACGATGTTTTGAATAGAGCCACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGA 109673
| ||||||||| || ||||| | | || |||| | | ||||| | | ||
Sbjct 28892 TGGAACGTTTTGAATGGATCCACC-GTCAGCA--ATGATACGGTTTTTCATGTTATCGGA 28836
Query 109674 CCAGAGACCGACCTTTTTGAGATCGTCAACAAGATGCTTG--TTGACCACGACAAATTCA 109731
||| || || | | ||||| | | ||| | || ||||| || || ||
Sbjct 28835 CCACAGTCCCATATCAACCAGATCCTTGAGAAGC--CATGGATTGACAACTTGGAACTCT 28778
Query 109732 CCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTG 109791
|||||||| ||||| ||||||||| | ||||| || ||||| ||||| |||
Sbjct 28777 CCAGCAAGAACACGTCGAGAGTAGATGTTGGAGGTGTATGGCTCGAAGCACTCGTTGAAT 28718
Query 109792 CCTAGGATTTGTGCAGTGGAA---GCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGG 109848
|| || ||||| | ||| | || || ||||| ||||| | ||| | |||||| |||
Sbjct 28717 CCAAGAATTTG---ACTGGTACTGGCAGTTGGCATAGGAGCGACGAGCAAACTGTTGCGG 28661
Query 109849 AGACCCTTCGTCTTTACCCGCTCACGCATTGCGT---CCCAATCATAACGACCACTAAAT 109905
| ||| | | | ||| || || | ||||||| || || | || |
Sbjct 28660 ATACCATGTTGAGCAATCTGCT---GCTTTAAGCTAGCCCAATCCCAAAGATCCGTAGGT 28604
Query 109906 TTAGTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTG 109965
|| || ||||||| || ||| || | |||| | ||||| || || | |
Sbjct 28603 GTAA------CACCCCACATGTCATATTGGAGCTCGCCCTTGGAGGCAGGTGAGCCTTGG 28550
Query 109966 AAACTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGA 110025
|| |||| || | || | || || |||||||| ||||| | || || ||
Sbjct 28549 TAAGTCTCATATGTACCATGAATCTTTGCCAACTCCATGGAAGCAGTCAAAGCAGCGTGG 28490
Query 110026 TACATAGTCTCAAAAATATGAGCATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGA 110085
|| || || || || || || || | | | | |||| | ||||| ||||||
Sbjct 28489 TAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTGGCCTCTGGGGACTCGAATGGAAGA 28430
Query 110086 CCACAAAG--AATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGC------ 110137
| | | || || ||| |||| || ||||| || ||||| ||| |||| || |
Sbjct 28429 CGA-AGAGCCAAGAAAG-CATCAGCAAGACCTTGGACACCAAGAGCAATAGGTCTGTGGC 28372
Query 110138 -GA---TGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATG 110193
|| |||| | || || ||| ||| | ||||| ||||| |||||
Sbjct 28371 GGAAATTGCTCTTTCTT---GCCTCGGGCA-------CAGGGTAGTAGTTGATATCGATA 28322
Query 110194 ACCCGATTGAGATTCTTCGTCACAGTCTTCGT-GATTTCATGGAGTTTGTCGTAATCGAA 110252
| | || | ||||| ||| ||| | || || || || || | | | || |
Sbjct 28321 ATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGCTTCTGGAAGTCATA 28263
Query 110253 CGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGA 110312
|| |||| || || |||||| | |||||||| | || || | ||||| ||||
Sbjct 28262 AGTGGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCCAAGTTGCAAACAGC 28203
Query 110313 AGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGAC 110372
| ||| || | |||||| | |||||| |||||||||||||| || |||
Sbjct 28202 AACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTGGAGCTTCGGATGGT 28143
Query 110373 ACCCAAGTTCTTCTGATT-CGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGG 110431
||| | ||||| || || | ||| | |||||| |||||||| || |||||| | |||
Sbjct 28142 ACCAAGATTCTTTTGGTTGCTCTTTCG-GTTGCAAGCATCCTTGTAAAGCATGAAAGGGT 28084
Query 110432 TACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTG 110491
| ||||| || || || | || ||| || | | ||| | | ||| || ||
Sbjct 28083 TTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGGGCCTTGA----TG 28028
Query 110492 CGTTAGCGAGACCTT--CCTC---CTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCC 110546
| | ||| | |||| |||| |||||| || |||||| |||| ||||| | ||
Sbjct 28027 CTCTTGCG-GCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCGAATTCGTCACC 27969
Query 110547 GTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTC 110606
||| || || | | ||| || | || || | | | ||| | ||
Sbjct 27968 GTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAGTCAAGGTTCTT 27909
Query 110607 CTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACG 110666
||||| | ||||||||| || || |||||||| | || ||||||| |||||| |||
Sbjct 27908 TTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGATCACGGGCACG 27849
Query 110667 AGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCA 110726
| |||| || | || ||||| || || || | || || | | ||| | ||||||
Sbjct 27848 AACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACATCGGCGTGCCA 27789
Query 110727 TGGTTCGAGATAGACAGCGATGGATCCCTTACGACG------ACCCGCCTGGTTAACATA 110780
||| ||||| |||| |||| | || | | || ||| | || | ||||||
Sbjct 27788 TGGCTCGAGGTAGATGGCGAAAGCACC---AGGTCGCTTGTTACCACCTTGATCAACATA 27732
Query 110781 GCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGT 110840
|| || ||| ||||| |||| |||||||||| ||||| | ||| | || |||||
Sbjct 27731 TCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTTCCGTTTGT 27672
Query 110841 ACCCCTAAT-TCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCG 110899
||| ||| | | || | |||| || || ||| | || | || |||||||| |
Sbjct 27671 ACCGGCAATGTAAGCAC-CAGTGGCGCGGATTCTGTGAACATTGAGTCCGATACCACCTG 27613
Query 110900 CCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAAATACCATCAATCGAATCT 110958
| ||| ||| |||| | ||| | | || | || ||||||||||| ||
Sbjct 27612 CGTTCTTTGAAATCATGGCACAAATCT-TCAAAGTGTCGTAGATACCATCAATGCTGTCC 27554
Query 110959 GCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAG 111018
|||| || | || || ||||| ||||| | || | | || || || ||| ||
Sbjct 27553 TCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCAGCAAAA 27494
Query 111019 AGTGTAGGTGTCGCATGAATGAACAGACCTTG--GGACATCTTGTTGTATGTGTCGAGTG 111076
||||| |||| || || ||| || |||| ||||||| |||||| || |||| |
Sbjct 27493 AGTGTTGGTGAGGCGTGGGTGA--AGTACTTGCTGGACATCAAGTTGTAAGTTTCGATGG 27436
Query 111077 CGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACATATATTGAGGCG 111136
| | | ||| | ||||| || || | || || ||||||| ||||| ||| ||
Sbjct 27435 CAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTTGTGGAC 27376
Query 111137 TTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTCTAGGGTCTTGAGACCAA 111196
|||| | ||| ||||| | || | || || ||| |||||||||| |||||
Sbjct 27375 GTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATCGCTCGAGGGTCTTGAAACCAA 27316
Query 111197 AGTAT 111201
|||||
Sbjct 27315 AGTAT 27311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588956924539800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |