Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2371 291 1e-73 seq1 102 1e-16 seq2036 96.9 4e-15 >seq2371 Length=131994 Score = 291 bits (322), Expect = 1e-73 Identities = 1171/1811 (65%), Gaps = 45/1811 (2%) Strand=Plus/Minus Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATGCATAGAAGA 105648 |||||||||||||| || ||||| || || ||||| || | | | ||||||| | Sbjct 29101 CGGAGATAGTACATTCCAGTCTTAAGACCCAACTTCCA-GCCTGCGAAATGCATACTGGT 29043 Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708 | ||| ||| |||||| | |||| | ||||| |||| || |||||||| Sbjct 29042 AATCTTCCCCATGGTTGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 28983 Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTG 105766 |||||| | || ||||| | || || | | | | ||| ||||||| || || Sbjct 28982 CGCACCACGGTCGGCAGCCATCTGAACGA--TGGTACGTTGTGAGATTTCCCAAACAGTC 28925 Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826 ||| || |||||||||| ||||||| | || | |||||||| || || || | Sbjct 28924 TTGTAAAGGGCCTTGATATCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCA 28865 Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886 | || | | ||||| | | |||||| || || || | ||||| |||| Sbjct 28864 GCAATGATACGGTTTTTCATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGA 28805 Query 105887 AGATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTC 105943 || | || ||||||| |||||||| || || | || ||| |||||||| Sbjct 28804 AGC--CATGGATTGACAACTTGGAACTCTCCAGCAAGAACACGTCG-AGAGTAGATGTTG 28748 Query 105944 GTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGG 106002 | ||||| || || ||||| || || | |||||| |||| ||| ||| ||||| Sbjct 28747 GAGGTGTATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTACTGGCAGTTGG 28689 Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062 ||| || || | | | |||||| || | ||| | || || | | ||| | Sbjct 28688 CATAGGAGCGACGAGCAAACTGTTGCGGATACCATGTTGAGCAATCTGCTGCTTTAAGCT 28629 Query 106063 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120 | |||| || | || | | ||| | || ||||||| ||| |||| ||| | || Sbjct 28628 AGCCCAATCCCAAA-GATCCGTAGGTGTAACAC-CCCACATGTCATATTGGAGCTCGCCC 28571 Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180 | ||| | || || || | | |||||||| | ||| || | ||||| || | Sbjct 28570 TTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTGCCAACTCCATG 28511 Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240 || || | ||||| || |||||||| ||||| | || | | |||||| Sbjct 28510 GAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTGGCC 28451 Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACAC 106298 || || || |||| | || | | | || ||| |||| || |||||||| |||| Sbjct 28450 TCTGGGGACTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACAC 28393 Query 106299 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAA 106355 | | | ||||||||||||| || | ||| ||||| || ||| || || || Sbjct 28392 CAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGC---CTCGGGCACAGGGTAGT 28336 Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAGT 106414 | || | || || | ||| | || ||| |||| ||| | || || ||||| Sbjct 28335 AGTTGATATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGC 28277 Query 106415 TTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCC 106474 || | | ||| ||||| ||||| |||| ||||| |||| || || | |||||| Sbjct 28276 TTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCC 28217 Query 106475 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTG 106534 || ||||||||||| |||||| | ||| || | |||||| |||||||||||| Sbjct 28216 AAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTG 28157 Query 106535 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAG 106594 || || || || || | |||||||||||| |||||| |||||| ||||||||||| Sbjct 28156 GAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAA 28097 Query 106595 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCG 106654 |||||| | || | || ||||| || || | || ||| || | | ||| | | | Sbjct 28096 AGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGG 28037 Query 106655 GC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711 || || | | | || ||||| | ||||| | |||||| || ||| | || || Sbjct 28036 GCCTTGATGCTCTTGC---GGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCG 27980 Query 106712 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCAT 106771 || || ||||| |||||| | ||| || || | || || | | | ||| Sbjct 27979 AATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAG 27920 Query 106772 TGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGA 106831 | | || ||||| ||||||||||| || ||||||||||| |||| | || ||| Sbjct 27919 TCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGA 27860 Query 106832 TCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 106891 || | ||| |||| || | || ||||| ||| | || |||||||| | | | Sbjct 27859 TCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACA 27800 Query 106892 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGA 106948 || |||||||||||||| || |||| |||| || || ||| ||| ||||| Sbjct 27799 TCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGA 27740 Query 106949 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 107008 | ||||| || || ||| ||| || || |||||||| |||| || || | || | Sbjct 27739 TCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTT 27680 Query 107009 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068 || ||||| || ||| || | |||| | | || | | | || ||| Sbjct 27679 CCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATA 27620 Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128 || || || |||||| || ||||| | | | ||| | |||||||| | || Sbjct 27619 CCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATG 27560 Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188 ||||||||| || |||| |||||||| || | || | ||||||||||||| Sbjct 27559 CTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCA 27500 Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246 || || ||||||| ||||| |||| || |||| ||||||| || ||| || | Sbjct 27499 GCAAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-CTTGCTGGACATCAAGTTGTAAGTTT 27442 Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306 | | | ||| ||||| || || ||||| || |||| || |||||||| | ||| | || Sbjct 27441 CGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTT 27382 Query 107307 GGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 107365 | || ||| || |||||||||| || | ||||| | || ||| ||||| ||| Sbjct 27381 GTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC-GCTCGAGGGTCTTG 27323 Query 107366 AGACCAAAGTA 107376 | ||||||||| Sbjct 27322 AAACCAAAGTA 27312 >seq1 Length=509191 Score = 102 bits (112), Expect = 1e-16 Identities = 167/240 (70%), Gaps = 12/240 (5%) Strand=Plus/Minus Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421 |||||| | ||||| || ||||||||||||| |||||| || ||| | | ||| || Sbjct 194704 CTTTCCAATCGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 194645 Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 | |||||||| ||||| || || || ||||||||||||||||||||||| | Sbjct 194644 AGCGAAGAGATCTCGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACT---- 194589 Query 9482 GGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535 ||||| || || || ||| || ||| ||||| || || |||| || || Sbjct 194588 --CGGAACCACTGACACTGAAGAAAGGCACACCTGATTCTCCAGCTGTGGCCTTTGCTAG 194531 Query 9536 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595 | ||||||||| ||||| || || | |||| ||| || || || ||||| || || Sbjct 194530 TAAAGTCTTACCAGTACCGGGTGGCCCAGAAAGGATGGCTCCTCGAGGGATCTTAGCACC 194471 >seq2036 Length=314316 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||||||||||||||| ||||| || | || || |||||| || || | |||||| || Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||||||||| | || | ||| || || ||||||||||||||| ||| Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCAAACCATTTCAT 117461 ||||| |||| ||| || | || |||| ||||| |||| | | |||| | Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG---TAGACTCCTTGTCTTGGATCCATCGGAC 236093 Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494 ||||| | |||||||||| ||| || || || Sbjct 236094 AGCCCAATCAGCCTTCTTCTTAATGCAAGGAAC 236126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589961691996840