Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 291 1e-73
seq1 102 1e-16
seq2036 96.9 4e-15
>seq2371
Length=131994
Score = 291 bits (322), Expect = 1e-73
Identities = 1171/1811 (65%), Gaps = 45/1811 (2%)
Strand=Plus/Minus
Query 105590 CGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTAC-ATATGCATAGAAGA 105648
|||||||||||||| || ||||| || || ||||| || | | | ||||||| |
Sbjct 29101 CGGAGATAGTACATTCCAGTCTTAAGACCCAACTTCCA-GCCTGCGAAATGCATACTGGT 29043
Query 105649 GAGCTTGGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAA 105708
| ||| ||| |||||| | |||| | ||||| |||| || ||||||||
Sbjct 29042 AATCTTCCCCATGGTTGGATCCTTCATGTGGATGTTCATTGATTGAGATTGATCAATGAA 28983
Query 105709 GCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGA--TTTCCCACACTGTG 105766
|||||| | || ||||| | || || | | | | ||| ||||||| || ||
Sbjct 28982 CGCACCACGGTCGGCAGCCATCTGAACGA--TGGTACGTTGTGAGATTTCCCAAACAGTC 28925
Query 105767 CGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCC 105826
||| || |||||||||| ||||||| | || | |||||||| || || || |
Sbjct 28924 TTGTAAAGGGCCTTGATATCAGCTGGGATGTTTGGAACGTTTTGAATGGATCCACCGTCA 28865
Query 105827 TTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACG 105886
| || | | ||||| | | |||||| || || || | ||||| ||||
Sbjct 28864 GCAATGATACGGTTTTTCATGTTATCGGACCACAGTCCCATATCAACCAGATCCTTGAGA 28805
Query 105887 AGATGCTTG--TTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGA-TAGATGTTC 105943
|| | || ||||||| |||||||| || || | || ||| ||||||||
Sbjct 28804 AGC--CATGGATTGACAACTTGGAACTCTCCAGCAAGAACACGTCG-AGAGTAGATGTTG 28748
Query 105944 GTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGGAGGCTGTTGG 106002
| ||||| || || ||||| || || | |||||| |||| ||| ||| |||||
Sbjct 28747 GAGGTGTATGGCTCGAAGCACTCGTTGA-ATCCAAGAATTTGACTGGTACTGGCAGTTGG 28689
Query 106003 CATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAAC 106062
||| || || | | | |||||| || | ||| | || || | | ||| |
Sbjct 28688 CATAGGAGCGACGAGCAAACTGTTGCGGATACCATGTTGAGCAATCTGCTGCTTTAAGCT 28629
Query 106063 ATCCCAGTCGTAGTTGAGC--TTGGTTTCACCTTCCCACATATCAAATTGAAGCACCCCT 106120
| |||| || | || | | ||| | || ||||||| ||| |||| ||| | ||
Sbjct 28628 AGCCCAATCCCAAA-GATCCGTAGGTGTAACAC-CCCACATGTCATATTGGAGCTCGCCC 28571
Query 106121 TGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAG 106180
| ||| | || || || | | |||||||| | ||| || | ||||| || |
Sbjct 28570 TTGGAGGCAGGTGAGCCTTGGTAAGTCTCATATGTACCATGAATCTTTGCCAACTCCATG 28511
Query 106181 CTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCT 106240
|| || | ||||| || |||||||| ||||| | || | | ||||||
Sbjct 28510 GAAGCAGTCAAAGCAGCGTGGTAAATGGTTTCGAAGATTTGGATGTTGAGGTGCTTGGCC 28451
Query 106241 TCATCTGAATCAAATGCGTAGCGGCACAA--AATAAATACATCCGCGAGACCTTGAACAC 106298
|| || || |||| | || | | | || ||| |||| || |||||||| ||||
Sbjct 28450 TCTGGGGACTCGAATG-GAAGACGAAGAGCCAAGAAAG-CATCAGCAAGACCTTGGACAC 28393
Query 106299 CCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAA 106355
| | | ||||||||||||| || | ||| ||||| || ||| || || ||
Sbjct 28392 CAAGAGCAATAGGTCTGTGGCGGAAATTGCTCTTTCTTGC---CTCGGGCACAGGGTAGT 28336
Query 106356 AATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGT-GATTTCATGAAGT 106414
| || | || || | ||| | || ||| |||| ||| | || || |||||
Sbjct 28335 AGTTGATATCGATAATCTTGTTCAAGTTCTTGACGACAA-CTTGGCAGACCTCGTGAAGC 28277
Query 106415 TTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCC 106474
|| | | ||| ||||| ||||| |||| ||||| |||| || || | ||||||
Sbjct 28276 TTCTGGAAGTCATAAGTGGCAGTCTTCTCATCAACATATGTTGGGAGAGCCAGCGATGCC 28217
Query 106475 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTG 106534
|| ||||||||||| |||||| | ||| || | |||||| ||||||||||||
Sbjct 28216 AAGTTGCAAACAGCAACCTCATCAGGTGCACAGTATTCGACAATTTCAGTACACAAGTTG 28157
Query 106535 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAG 106594
|| || || || || | |||||||||||| |||||| |||||| |||||||||||
Sbjct 28156 GAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGGTTGCAAGCATCCTTGTAA 28097
Query 106595 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACACATCGGCG 106654
|||||| | || | || ||||| || || | || ||| || | | ||| | | |
Sbjct 28096 AGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATAGAGTACCAAAGCTTTTGG 28037
Query 106655 GC--TGGTACAATGGCGTTGGCCCGT-CCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCA 106711
|| || | | | || ||||| | ||||| | |||||| || ||| | || ||
Sbjct 28036 GCCTTGATGCTCTTGC---GGCCCTTGCCCTCAGACTCGTATTTCTCGTACAAAGCCTCG 27980
Query 106712 AACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCAT 106771
|| || ||||| |||||| | ||| || || | || || | | | |||
Sbjct 27979 AATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTCATTAGGGCACATCAATGTCCAG 27920
Query 106772 TGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGA 106831
| | || ||||| ||||||||||| || ||||||||||| |||| | || |||
Sbjct 27919 TCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGGAATCCAGAGGGCGTAGAAAAGA 27860
Query 106832 TCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGATA 106891
|| | ||| |||| || | || ||||| ||| | || |||||||| | | |
Sbjct 27859 TCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCGGAGGTCGAGGAACTCGAAAACA 27800
Query 106892 TCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCTTGA 106948
|| |||||||||||||| || |||| |||| || || ||| ||| |||||
Sbjct 27799 TCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACCAGGTCGCTTGTTACCACCTTGA 27740
Query 106949 TTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGA 107008
| ||||| || || ||| ||| || || |||||||| |||| || || | || |
Sbjct 27739 TCAACATATCGAGCGGTGTTGTTGAAAACCCGAAGCATAGGAACGATTCCGTTGGAGTTT 27680
Query 107009 CCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCAATA 107068
|| ||||| || ||| || | |||| | | || | | | || |||
Sbjct 27679 CCGTTTGTACCGGCAATGTAAGCACCAGTGGCGCGGATTCTGTGAACATTGAGTCCGATA 27620
Query 107069 CCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATT 107128
|| || || |||||| || ||||| | | | ||| | |||||||| | ||
Sbjct 27619 CCACCTGCGTTCTTTGAAATCATGGCACAAATCTTCAAAGTGTCGTAGATACCATCAATG 27560
Query 107129 GAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCA 107188
||||||||| || |||| |||||||| || | || | |||||||||||||
Sbjct 27559 CTGTCCTCCTTCATGTCGATGAGGAAGCATGAAGAAAGTTGTGCCTGTGGTGTACCAGCA 27500
Query 107189 TTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGTATGTCT 107246
|| || ||||||| ||||| |||| || |||| ||||||| || ||| || |
Sbjct 27499 GCAAAAAGTGTTGGTGAGGCGTGGGTGAA-GTA-CTTGCTGGACATCAAGTTGTAAGTTT 27442
Query 107247 CCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATT 107306
| | | ||| ||||| || || ||||| || |||| || |||||||| | ||| | ||
Sbjct 27441 CGATGGCAGCCTCAATATCCTCGCCGTGTATTCCGACAGCGACACGCATGATCATATGTT 27382
Query 107307 GGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA-GCTCTTCTCAAGGGTTTTG 107365
| || ||| || |||||||||| || | ||||| | || ||| ||||| |||
Sbjct 27381 GTGGACGTTCGCAGATCTTGCCATCGAGGCGGAGGAGATATGATC-GCTCGAGGGTCTTG 27323
Query 107366 AGACCAAAGTA 107376
| |||||||||
Sbjct 27322 AAACCAAAGTA 27312
>seq1
Length=509191
Score = 102 bits (112), Expect = 1e-16
Identities = 167/240 (70%), Gaps = 12/240 (5%)
Strand=Plus/Minus
Query 9362 CTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 9421
|||||| | ||||| || ||||||||||||| |||||| || ||| | | ||| ||
Sbjct 194704 CTTTCCAATCGCATCGATTTCATCAATGAAGATAATACAAGGGGTATTCTTTCTGGCCAT 194645
Query 9422 TTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481
| |||||||| ||||| || || || ||||||||||||||||||||||| |
Sbjct 194644 AGCGAAGAGATCTCGAACTCTGGAAGCACCAACACCAACAAACATCTCCACAAACT---- 194589
Query 9482 GGCGGAA-CATTG-----GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAG 9535
||||| || || || ||| || ||| ||||| || || |||| || ||
Sbjct 194588 --CGGAACCACTGACACTGAAGAAAGGCACACCTGATTCTCCAGCTGTGGCCTTTGCTAG 194531
Query 9536 AAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC 9595
| ||||||||| ||||| || || | |||| ||| || || || ||||| || ||
Sbjct 194530 TAAAGTCTTACCAGTACCGGGTGGCCCAGAAAGGATGGCTCCTCGAGGGATCTTAGCACC 194471
>seq2036
Length=314316
Score = 96.9 bits (106), Expect = 4e-15
Identities = 151/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
||||||||||||||| ||||| || | || || |||||| || || | |||||| ||
Sbjct 235917 GTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGACCAGCCATGAGGCC 235976
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||||||||| | || | ||| || || ||||||||||||||| |||
Sbjct 235977 ACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGATACCCTCAACAGC 236036
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGT-GTCAAACCATTTCAT 117461
||||| |||| ||| || | || |||| ||||| |||| | | |||| |
Sbjct 236037 AGCAAAGGCAACAAGACGTTGAGCAAAGG---TAGACTCCTTGTCTTGGATCCATCGGAC 236093
Query 117462 TGCCCATTTCGCCTTCTTCTCAATACATGGTAC 117494
||||| | |||||||||| ||| || || ||
Sbjct 236094 AGCCCAATCAGCCTTCTTCTTAATGCAAGGAAC 236126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589961691996840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |