Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1798 138 1e-27 >seq1798 Length=66087 Score = 138 bits (152), Expect = 1e-27 Identities = 199/281 (71%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481 |||||||| | |||| | ||| | |||||| ||||| | |||||||| || |||||| Sbjct 18490 GACATTGCATTTGGTAATGCCCAACGATTTGGTGTTCCTTTTGGATACGGTGGGCCTCAT 18549 Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541 ||||| |||||||| | || || |||||| | || || || || | | | || Sbjct 18550 GCTGCTTTCTTTGCCGTTAGCGATAAATATAAGCGTAAAATCCCAGGACGCCTCATCGGA 18609 Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601 ||| || || || |||| ||| ||||| ||||| || ||| ||||||| Sbjct 18610 GTTTCAAAGGACAGACTTGGAGATAAGGCAATGAGATTGGCACTTCAAACTCGAGAGCAA 18669 Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 |||||| ||||||| || || ||||| || | ||||||||||| ||| |||| || || Sbjct 18670 CATATCCGAAGAGAAAAGGCTACCAGCAATGTGTGCACAGCACAGGCATTGCTTGCAAAC 18729 Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702 ||| || |||||||| | |||||| || |||| || || Sbjct 18730 ATGAGTGCTTTCTATGCTGTATATCACGGCCCAGAGGGTCT 18770 Score = 104 bits (114), Expect = 3e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605 || |||||||| || |||||||| |||||| ||||| | | ||| | | | | || Sbjct 19690 ATCATGATTACTTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTCAAGGCTGTT-TG 19748 Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665 || | ||||| | |||| || || || || | |||||||| ||| | ||||| || Sbjct 19749 CGAGTTGGTTCACCAACATGGAGGACAAGTTTACATGGATGGTGCTAATATGAATGCTCA 19808 Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725 | || | ||| |||| ||| || ||||| || ||||| ||| | || || Sbjct 19809 AATCGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGCCATCTCAACCTTCACAA 19868 Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||||||||| || || ||||| ||||| || || ||||| |||||||| Sbjct 19869 GACATTCTGTATTCCTCACGGCGGTGGTGGTCCAGGTGTTGGTCCAATTGGTGT 19922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588032154491760