Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_015284.1
Length=183806
Score E
Sequences producing significant alignments: (Bits) Value
seq1798 138 1e-27
>seq1798
Length=66087
Score = 138 bits (152), Expect = 1e-27
Identities = 199/281 (71%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 158422 GACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCAT 158481
|||||||| | |||| | ||| | |||||| ||||| | |||||||| || ||||||
Sbjct 18490 GACATTGCATTTGGTAATGCCCAACGATTTGGTGTTCCTTTTGGATACGGTGGGCCTCAT 18549
Query 158482 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGT 158541
||||| |||||||| | || || |||||| | || || || || | | | ||
Sbjct 18550 GCTGCTTTCTTTGCCGTTAGCGATAAATATAAGCGTAAAATCCCAGGACGCCTCATCGGA 18609
Query 158542 CAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAG 158601
||| || || || |||| ||| ||||| ||||| || ||| |||||||
Sbjct 18610 GTTTCAAAGGACAGACTTGGAGATAAGGCAATGAGATTGGCACTTCAAACTCGAGAGCAA 18669
Query 158602 CATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661
|||||| ||||||| || || ||||| || | ||||||||||| ||| |||| || ||
Sbjct 18670 CATATCCGAAGAGAAAAGGCTACCAGCAATGTGTGCACAGCACAGGCATTGCTTGCAAAC 18729
Query 158662 ATGTCTGGGTTCTATGCAGCATATCATGGTGCAGATGGACT 158702
||| || |||||||| | |||||| || |||| || ||
Sbjct 18730 ATGAGTGCTTTCTATGCTGTATATCACGGCCCAGAGGGTCT 18770
Score = 104 bits (114), Expect = 3e-17
Identities = 165/234 (71%), Gaps = 2/234 (1%)
Strand=Plus/Plus
Query 159547 ATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCA-GACAGATATG 159605
|| |||||||| || |||||||| |||||| ||||| | | ||| | | | | ||
Sbjct 19690 ATCATGATTACTTACCCATCTACCTTTGGTGTCTTTGAGCCCGAAGTCAAGGCTGTT-TG 19748
Query 159606 TAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACA 159665
|| | ||||| | |||| || || || || | |||||||| ||| | ||||| ||
Sbjct 19749 CGAGTTGGTTCACCAACATGGAGGACAAGTTTACATGGATGGTGCTAATATGAATGCTCA 19808
Query 159666 GGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAA 159725
| || | ||| |||| ||| || ||||| || ||||| ||| | || ||
Sbjct 19809 AATCGGATTGTGCTCACCTGGTGAGATTGGGGCTGATGTTTGCCATCTCAACCTTCACAA 19868
Query 159726 GACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779
||||||||||||||| || || ||||| ||||| || || ||||| ||||||||
Sbjct 19869 GACATTCTGTATTCCTCACGGCGGTGGTGGTCCAGGTGTTGGTCCAATTGGTGT 19922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588032154491760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |