Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq778 163 6e-35
seq2459 109 1e-18
>seq778
Length=242110
Score = 163 bits (180), Expect = 6e-35
Identities = 147/185 (79%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || || || |||||||||| ||| || | ||||| |||
Sbjct 99033 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCG 98974
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || |||||||| |||||||||||||| |||||||| || ||||| |||
Sbjct 98973 AGCTGCTTTCCGGCAAAGATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 98914
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| || || ||||||||| ||||| || ||||| | |||||
Sbjct 98913 ATCTTGCTCTTGACGTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTA 98854
Query 195112 CCTGT 195116
|| ||
Sbjct 98853 CCGGT 98849
Score = 152 bits (168), Expect = 1e-31
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||||| | ||| | ||| |||||||| || || || ||||||||||||| ||| || |
Sbjct 99327 GAGTCGGAGAACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCG 99268
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
|| || || |||||||| || || |||||||| || ||||||||||| || || || ||
Sbjct 99267 ACCGTCCTCAAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTC 99208
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| ||||| || |||||||| || ||||| || ||| ||||| || |||||
Sbjct 99207 CTTGTCCTGAATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGT 99148
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGA 195130
| ||||| || |||||||| || ||||
Sbjct 99147 GATGGTCTTACCAGTCAAAGTCTTGACGA 99119
Score = 138 bits (152), Expect = 3e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| | |||| ||| |||||||| ||||||||| || || | ||||| ||
Sbjct 99773 ACCAGGTGCAAAGTGCTCTCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCC 99714
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| |||||| ||||||||||| | ||| ||||| ||||| ||||| || || || || ||
Sbjct 99713 AACTGCTTGCCTGCGAAGATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGG 99654
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| ||| |||||| || ||||| ||||||||| || ||||| | || | |||||
Sbjct 99653 ATCTTTGACTTGACATTATCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTG 99594
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || || || | |||||
Sbjct 99593 CCAGTCAAAGTCTTAACAAAGATCTGCAT 99565
>seq2459
Length=125150
Score = 109 bits (120), Expect = 1e-18
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
|| || || ||||| || ||||| || || || ||||| || | ||| || | |||||
Sbjct 17194 AAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGACCATCC 17253
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
|| || ||||| || || ||||| | || |||||||| || ||||| || || |||||
Sbjct 17254 TCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGGAATTCCCTCCTTGTCC 17313
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108
|| || || |||||| || || ||||||||||| || || |||||||| | |||
Sbjct 17314 TGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTC 17373
Query 195109 TTTCCTGT 195116
|| || ||
Sbjct 17374 TTGCCCGT 17381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109444768331297
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |