Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq778 89.7 3e-13 >seq778 Length=242110 Score = 89.7 bits (98), Expect = 3e-13 Identities = 125/173 (72%), Gaps = 8/173 (5%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || |||||| | || |||| || ||||| ||||||||||| Sbjct 99015 TCCTTCTGGATGTTGTAATCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAG 98956 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| |||||| | || | ||||||||||| |||||| ||||| Sbjct 98955 ATAAGGCGTTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGAC---- 98900 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 | | ||||| | ||| | ||| || |||| ||| ||||| || || |||| Sbjct 98899 GTTGTCGATAGTGTCCGAAGACTCCACCTCGAGGGTGATGGTCTTACCGGTGA 98847 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| ||| ||||| || || || || ||||| | || | || || Sbjct 99318 AACCAAGTGCAGAGTGGATTCCTTCTGGATATTGTAATCGGAAAGTGTGCGACCGTCCTC 99259 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || ||||| || || || || |||||| | || | ||||||||||| Sbjct 99258 AAGCTGCTTGCCAGCAAAGATAAGGCGCTGTTGGTCTGGTGGGATACCCTCCTTGTCCTG 99199 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||||| ||||||| | || | || | ||| || |||| ||| ||||| || Sbjct 99198 AATCTTCGATTTGACGTTGTCGATGGTATCGGAAGACTCCACCTCGAGGGTGATGGTCTT 99139 Query 34952 TCCCGTGAGAGTCTTCAC 34969 || || | |||||| || Sbjct 99138 ACCAGTCAAAGTCTTGAC 99121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324623348781048