Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq491 125 6e-23
seq1401 102 7e-16
seq623 93.3 3e-13
seq1 89.7 4e-12
>seq491
Length=100261
Score = 125 bits (138), Expect = 6e-23
Identities = 519/811 (64%), Gaps = 17/811 (2%)
Strand=Plus/Minus
Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTG 551847
|| ||| |||| | ||||| || ||||| || || ||||| || | || || |
Sbjct 74636 GGTGATACTCACTTGGGTGGTGAGGATTTCGACAACAGACTTGTTAACCACTTCGTCTCC 74577
Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTC 551907
|| || ||||| || |||| || || ||||| ||| |||||||||||||
Sbjct 74576 GAG--TTCAAACGCAAGCACAAGAAGGACCTTTCTACCAACGCCCGTGCTCTTCGTCGTC 74519
Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967
| | ||||| ||||| |||| || ||| | ||||| || | | ||||| | || |
Sbjct 74518 TCCGCACTGCATGCGAGCGAGCTAAGCGAACCCTTTCCTCCTCTGCACAAACTTCCATCG 74459
Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027
|| | || || | || ||||| || || | | || | || | | |||| ||| |
Sbjct 74458 AAATTGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACTCGTGCCAGATTCG 74399
Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087
| || | || |||||||| || || | ||||| || | || | ||
Sbjct 74398 AGGAGCTCTGCCAGGATCTCTTCCGATCCACCACCACCCCAGTCGACCGTGTCCTCGCAG 74339
Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147
|| | |||||||| |||||||| || || || || || ||||| || || || || | |
Sbjct 74338 ATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGAGGTTCCACTCGTA 74279
Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAAA 552204
| || | ||| | ||| | | | | | ||| ||||| || || | ||| ||
Sbjct 74278 TCCCAAGAATCC---AAAAGCTCATTACCGATTACTTCAACGGAAAGGAGCCAAAC--AA 74224
Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262
|| | || || |||||||||||||| || ||||| || | || || || ||||| ||
Sbjct 74223 GTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCCATTCTCTC 74164
Query 552263 TGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATC 552319
||| | | || | || | || || | || | || | ||||| | || | ||
Sbjct 74163 CGGAGACACCTCTTCCAAGTCCACCAACGAGATCCTCCTCCTCGATGTCGCGCCATTGTC 74104
Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379
|||||| | || || | ||| ||| ||||| || |||||| ||||| || || ||
Sbjct 74103 CCTTGGTATCGAGACTGCTGGTGGTCAAATGACCAAGCTTATCCCAAGAAACACCACCAT 74044
Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439
|| || || || || || || || | || || || ||| ||| ||| ||
Sbjct 74043 CCCAACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAACCTGGTGTGCTTAT 73984
Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499
||| | || || || || | || ||| || || || || | | |||| || |
Sbjct 73983 CCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAAATTCGA 73924
Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559
| ||||| || ||||| || ||||| || || |||||||| || || |||||| |
Sbjct 73923 GCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGGTCACCTTCGATGT 73864
Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCT 552590
|| ||||| ||||| |||| || |||||
Sbjct 73863 TGACGCCAACGGAATCATGAACGTCTCTGCT 73833
Score = 116 bits (128), Expect = 3e-20
Identities = 382/591 (65%), Gaps = 2/591 (0%)
Strand=Plus/Minus
Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051
|| |||||||| ||| | |||||||| || ||||| ||| ||| | ||| | |
Sbjct 75290 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATTTACCGTGATGATCGA 75231
Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111
|||| ||||| || || || || || ||| ||||||| || || | ||| | |||||
Sbjct 75230 ATTGAGATTATCGCAAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCACA 75171
Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171
|| || || | | | | || ||||| ||||| | |||| | | || || ||||
Sbjct 75170 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 75111
Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231
|| | || || || || ||||| |||||| ||| || || | || |||||
Sbjct 75110 ACAGTCTTCGACGCAAAGCGTTTGATTGGACGAAAGTTCGCAGACCAGGAGGTGCAGGCT 75051
Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291
||||||||||| | |||||| | | | | |||||| || | || | |
Sbjct 75050 GATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGA-GAT 74992
Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350
| |||| | || ||||| |||||||| |||| || || ||| | || |
Sbjct 74991 TGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 74932
Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410
|| |||| | | || ||| || | ||||| | || | | || || | ||
Sbjct 74931 CAAGATGAGAGAGACTGCCGAGGCCTACCTTGGTGGAACCGTCAACAACGCCGTCGTCAC 74872
Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470
|| ||||| || || | || |||||||||||||| || || ||||| || | || ||
Sbjct 74871 AGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTGATCGC 74812
Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
||| || || || || ||||| ||||| || ||||| || || || |||| || || ||
Sbjct 74811 TGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTCT 74752
Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581
|| || | ||| || | || || |||||||||||| ||| ||
Sbjct 74751 CGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 74701
>seq1401
Length=76520
Score = 102 bits (112), Expect = 7e-16
Identities = 109/143 (76%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468
|| || ||||| || || || || |||||||||||||| || || |||||||| | |||
Sbjct 32214 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 32155
Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528
|| || ||||| ||||| | | |||| || || ||||||||||| ||||| |||||
Sbjct 32154 GCCGGTCTTAACGTTCTGAGAGTAGTCAACGAGCCAACTGCTGCTGCCCTTGCCTATGGT 32095
Query 550529 CTTGATAAACATAATGATCAAGA 550551
||||| || || | || |||||
Sbjct 32094 CTTGAGAAGGATGAGGA-CAAGA 32073
>seq623
Length=95226
Score = 93.3 bits (102), Expect = 3e-13
Identities = 113/153 (74%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437
||||| |||||| || | | ||||| || ||||| ||||| || || || ||| ||
Sbjct 32035 GTTGGGCAAGAAAGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 32094
Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497
||||||||| || || ||||| || ||||| || ||||| ||||| || || |||||
Sbjct 32095 ACGTCAAGCCACCAAGGATGCGGGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAA 32154
Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530
|| || ||||| ||||| | ||||| || ||
Sbjct 32155 CGAGCCCACTGCCGCTGCTATCGCATACGGTCT 32187
>seq1
Length=509191
Score = 89.7 bits (98), Expect = 4e-12
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 549987 AAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATG 550046
|| ||| ||| ||||| |||||||||||||| || ||||| ||||| ||| || |
Sbjct 353600 AAATAGTTATCGGTATCGATTTAGGAACCACCTACTCGTGTGTGGGTGTGATGCAGAACG 353659
Query 550047 GTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTT 550106
| || || ||||| | | || || ||||| |||||| ||| ||||| ||||| | |
Sbjct 353660 GAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATATGTCGCAT 353719
Query 550107 TCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTA 550166
| || || ||| ||||| || || ||||| || |||| || |||| || || |
Sbjct 353720 TTACCGATGAGGAAAGATTAGTAGGAGACGCAGCCAAGAATCAGGCTGCTGGAAACCCAA 353779
Query 550167 CCAATACTATTTTTGAT 550183
|| || || ||||||
Sbjct 353780 AGAACACCATCTTTGAT 353796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029158976234590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |