Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq491 125 6e-23 seq1401 102 7e-16 seq623 93.3 3e-13 seq1 89.7 4e-12 >seq491 Length=100261 Score = 125 bits (138), Expect = 6e-23 Identities = 519/811 (64%), Gaps = 17/811 (2%) Strand=Plus/Minus Query 551790 GGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTGTTG 551847 || ||| |||| | ||||| || ||||| || || ||||| || | || || | Sbjct 74636 GGTGATACTCACTTGGGTGGTGAGGATTTCGACAACAGACTTGTTAACCACTTCGTCTCC 74577 Query 551848 AAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAAAGCTCTTCGTCGTC 551907 || || ||||| || |||| || || ||||| ||| ||||||||||||| Sbjct 74576 GAG--TTCAAACGCAAGCACAAGAAGGACCTTTCTACCAACGCCCGTGCTCTTCGTCGTC 74519 Query 551908 TAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTG 551967 | | ||||| ||||| |||| || ||| | ||||| || | | ||||| | || | Sbjct 74518 TCCGCACTGCATGCGAGCGAGCTAAGCGAACCCTTTCCTCCTCTGCACAAACTTCCATCG 74459 Query 551968 AAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTG 552027 || | || || | || ||||| || || | | || | || | | |||| ||| | Sbjct 74458 AAATTGACTCTCTCTTCGAGGGTATCGACTTCTACACCTCCATCACTCGTGCCAGATTCG 74399 Query 552028 AAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAG 552087 | || | || |||||||| || || | ||||| || | || | || Sbjct 74398 AGGAGCTCTGCCAGGATCTCTTCCGATCCACCACCACCCCAGTCGACCGTGTCCTCGCAG 74339 Query 552088 ATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAA 552147 || | |||||||| |||||||| || || || || || ||||| || || || || | | Sbjct 74338 ATGCCAAGATTGACAAATCCAAGGTTCACGAGATCGTCCTTGTCGGAGGTTCCACTCGTA 74279 Query 552148 TTCCTAAAATTCGCGAAATGTTAAGTTC---TTATTTCAATGGTAAAAAATTAAATGAAA 552204 | || | ||| | ||| | | | | | ||| ||||| || || | ||| || Sbjct 74278 TCCCAAGAATCC---AAAAGCTCATTACCGATTACTTCAACGGAAAGGAGCCAAAC--AA 74224 Query 552205 GTG--TTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || |||||||||||||| || ||||| || | || || || ||||| || Sbjct 74223 GTCCATCAACCCTGATGAGGCTGTTGCATACGGTGCTGCCGTCCAGGCTGCCATTCTCTC 74164 Query 552263 TGGACA-AACTGATGAAAAACTACAAA--ATATTGTACTTGTAGATGTTACTCCTCTATC 552319 ||| | | || | || | || || | || | || | ||||| | || | || Sbjct 74163 CGGAGACACCTCTTCCAAGTCCACCAACGAGATCCTCCTCCTCGATGTCGCGCCATTGTC 74104 Query 552320 TCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTAT 552379 |||||| | || || | ||| ||| ||||| || |||||| ||||| || || || Sbjct 74103 CCTTGGTATCGAGACTGCTGGTGGTCAAATGACCAAGCTTATCCCAAGAAACACCACCAT 74044 Query 552380 TCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAAT 552439 || || || || || || || || | || || || ||| ||| ||| || Sbjct 74043 CCCAACCAAGAAGTCCGAGGTCTTCTCCACCTTCTCTGACAACCAACCTGGTGTGCTTAT 73984 Query 552440 TCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAA 552499 ||| | || || || || | || ||| || || || || | | |||| || | Sbjct 73983 CCAAGTCTTCGAGGGTGAGCGTCAACGCACCAAGGACAACAACCTTTTGGGTAAATTCGA 73924 Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559 | ||||| || ||||| || ||||| || || |||||||| || || |||||| | Sbjct 73923 GCTCACTGGTATCCCACCTGCACCACGTGGTGTCCCACAAATTGAGGTCACCTTCGATGT 73864 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || ||||| ||||| |||| || ||||| Sbjct 73863 TGACGCCAACGGAATCATGAACGTCTCTGCT 73833 Score = 116 bits (128), Expect = 3e-20 Identities = 382/591 (65%), Gaps = 2/591 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || |||||||| ||| | |||||||| || ||||| ||| ||| | ||| | | Sbjct 75290 GCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATTTACCGTGATGATCGA 75231 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||| ||||| || || || || || ||| ||||||| || || | ||| | ||||| Sbjct 75230 ATTGAGATTATCGCAAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCACA 75171 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | | || ||||| ||||| | |||| | | || || |||| Sbjct 75170 GATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAAC 75111 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || | || || || || ||||| |||||| ||| || || | || ||||| Sbjct 75110 ACAGTCTTCGACGCAAAGCGTTTGATTGGACGAAAGTTCGCAGACCAGGAGGTGCAGGCT 75051 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| | |||||| | | | | |||||| || | || | | Sbjct 75050 GATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGA-GAT 74992 Query 550292 ACTCATGAAGGATCTGTTAAA-CAATTTTCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | || ||||| |||||||| |||| || || ||| | || | Sbjct 74991 TGAGTTCAAGGGCGAGAAGAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCTTGGT 74932 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || |||| | | || ||| || | ||||| | || | | || || | || Sbjct 74931 CAAGATGAGAGAGACTGCCGAGGCCTACCTTGGTGGAACCGTCAACAACGCCGTCGTCAC 74872 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || ||||| || || | || |||||||||||||| || || ||||| || | || || Sbjct 74871 AGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTGATCGC 74812 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| || || || || ||||| ||||| || ||||| || || || |||| || || || Sbjct 74811 TGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCAGCCGCCATTGCTTACGGTCT 74752 Query 550531 TGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || || | ||| || | || || |||||||||||| ||| || Sbjct 74751 CGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 74701 >seq1401 Length=76520 Score = 102 bits (112), Expect = 7e-16 Identities = 109/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || ||||| || || || || |||||||||||||| || || |||||||| | ||| Sbjct 32214 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 32155 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 || || ||||| ||||| | | |||| || || ||||||||||| ||||| ||||| Sbjct 32154 GCCGGTCTTAACGTTCTGAGAGTAGTCAACGAGCCAACTGCTGCTGCCCTTGCCTATGGT 32095 Query 550529 CTTGATAAACATAATGATCAAGA 550551 ||||| || || | || ||||| Sbjct 32094 CTTGAGAAGGATGAGGA-CAAGA 32073 >seq623 Length=95226 Score = 93.3 bits (102), Expect = 3e-13 Identities = 113/153 (74%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 550379 GTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACA 550437 ||||| |||||| || | | ||||| || ||||| ||||| || || || ||| || Sbjct 32035 GTTGGGCAAGAAAGTCGCCAAGGCAGTCATCACTGTCCCAGCCTACTTCAACGACAACCA 32094 Query 550438 ACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAA 550497 ||||||||| || || ||||| || ||||| || ||||| ||||| || || ||||| Sbjct 32095 ACGTCAAGCCACCAAGGATGCGGGTGCCATTGCCGGTCTTAACGTTCTCCGAATCATCAA 32154 Query 550498 TGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 || || ||||| ||||| | ||||| || || Sbjct 32155 CGAGCCCACTGCCGCTGCTATCGCATACGGTCT 32187 >seq1 Length=509191 Score = 89.7 bits (98), Expect = 4e-12 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 549987 AAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATG 550046 || ||| ||| ||||| |||||||||||||| || ||||| ||||| ||| || | Sbjct 353600 AAATAGTTATCGGTATCGATTTAGGAACCACCTACTCGTGTGTGGGTGTGATGCAGAACG 353659 Query 550047 GTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTT 550106 | || || ||||| | | || || ||||| |||||| ||| ||||| ||||| | | Sbjct 353660 GAAAGGTCGAAATCCTCGTAAACGACCAAGGACACAGAATTACACCATCATATGTCGCAT 353719 Query 550107 TCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTA 550166 | || || ||| ||||| || || ||||| || |||| || |||| || || | Sbjct 353720 TTACCGATGAGGAAAGATTAGTAGGAGACGCAGCCAAGAATCAGGCTGCTGGAAACCCAA 353779 Query 550167 CCAATACTATTTTTGAT 550183 || || || |||||| Sbjct 353780 AGAACACCATCTTTGAT 353796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029158976234590