Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq778 120 2e-22
seq2459 102 6e-17
>seq778
Length=242110
Score = 120 bits (132), Expect = 2e-22
Identities = 141/191 (74%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 101279 TCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAAT 101338
|| ||||| || ||||||||| || || | |||| ||||| ||||| ||||| ||
Sbjct 99755 TCCTTTTGAATGTTGTAATCGCTGAGGGTACGACCATCCTCCAACTGCTTGCCTGCGAAG 99696
Query 101339 ATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATT 101398
||||| ||||||||||| || ||||| || || ||||| || || ||| || ||| |
Sbjct 99695 ATCAATCGCTGTTGATCTGGTGGAATACCCTCCTTATCCTGGATCTTTGACTTGACATTA 99636
Query 101399 TCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACA 101458
|| | ||||| || | || ||||| | |||| || ||||| || ||||| || |||
Sbjct 99635 TCAATCGTGTCCGAAGACTCAACTTCTAATGTGATAGTCTTGCCAGTCAAAGTCTTAACA 99576
Query 101459 AATATCTGCAT 101469
|| ||||||||
Sbjct 99575 AAGATCTGCAT 99565
>seq2459
Length=125150
Score = 102 bits (112), Expect = 6e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301
|||||| | || |||||| || | ||||||||| || || || || || ||||| || |
Sbjct 17178 TCCTCCACGTAGACGTAAGACGAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 17237
Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361
| || | |||| || | |||||| || ||||| |||||||||||||| || || ||
Sbjct 17238 AAGGGTACGACCATCCTCAAGTTGCTTTCCAGCAAAGATCAAACGCTGTTGGTCCGGTGG 17297
Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421
||| || || || || || || || || ||| | || | ||||| || | || ||
Sbjct 17298 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCAAC 17357
Query 101422 TTCAAGAGTGACCGTTTTGCCGGT 101445
||||| |||| || ||||| ||
Sbjct 17358 CTCAAGGGTGATGGTCTTGCCCGT 17381
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396265886394987
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |