Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2036 111 3e-19 >seq2036 Length=314316 Score = 111 bits (122), Expect = 3e-19 Identities = 343/522 (66%), Gaps = 23/522 (4%) Strand=Plus/Plus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || | || | ||||| |||||||| ||||| || | | |||||||||||| Sbjct 235615 TGGTAATCAGCGACACGCTTCTCGAAGAAGTTGGTCTTTCCGGCGAGAGAGATGTTCTCC 235674 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCAG 47958 |||||| ||| ||||||| || || ||| | ||| ||| | || || Sbjct 235675 ATGAAGTCGAATGGGTTGGCAACCTTGTAAACCT-TCTCATTGCCGAGAGAAAGGAGAAG 235733 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 |||| ||||| |||| ||||||| ||| ||| || |||||||| | || | Sbjct 235734 ACGATCGGCGACAAACTCAATGTATTGCTTCATCAGGTTGGCATTCATGCCGAGAAGCGC 235793 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || | ||||| || | ||||| | ||| |||| || || || | | ||| Sbjct 235794 GCAAGGAAGAGCCTCAGTCAAGAACTCTTGCTCAATCTCGACAGCCTCGGTGATGA-CTG 235852 Query 48079 CTTAACGCGGGACTCTGAGGGTTTG-TTGCGCAGGTGCTT------GGCATAGAGCATGC 48131 ||| ||||| | | ||| ||| || | ||||| || |||| | || Sbjct 235853 CTT------GGACT--GCTGCCTTGCTTGGGC-GATGCTTCAAGTGGGAGAAGAGAAGGC 235903 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 | || ||||| |||| | || || || ||| ||| | | ||||||||||| |||| Sbjct 235904 ATGCGAAGTCGGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAGGTAAGAC 235963 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 ||| ||||| || | || || | |||||| || | |||||||| ||| |||||||| Sbjct 235964 CAGCCATGAGGCCACGCTTCTTCAACCAGAAGATGGATGCGAAAGAACCACTGAAGAAGA 236023 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 | ||||| || || || || || || | | | || | || | ||||||| || Sbjct 236024 TACCCTCAACAGCAGCAAAGGCAACAAGACGTTGAGCAAAGGTAGACTCCTTGTCTTGGA 236083 Query 48312 TCCA--GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGG 48351 |||| ||| | ||||| || ||||||||||| ||||| || Sbjct 236084 TCCATCGGACA--GCCCAATCAGCCTTCTTCTTAATGCAAGG 236123 Score = 98.7 bits (108), Expect = 2e-15 Identities = 172/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||||||||| | ||||| || ||| ||||| ||||||||| | |||||| | Sbjct 236255 TCTCAGAGTGGATGTTCTCCATCATGATTTGGAAACCGTAGAAGAATCGGGCCTCTGGGA 236314 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 || ||||| || ||| | ||| || || ||||||||||| || || || || |||| Sbjct 236315 TTTGAACTTCACTGCTGAAGCGCTCGAGGAGGTTCTCATTGACAATTCCGTCGGAGGCAG 236374 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAG---AGCATTCC 48605 | ||||| |||||||| || | ||| | ||| |||| | | |||| |||| Sbjct 236375 CGAAGAAAGCAAGGACGTGGGAGATGAAGTAGCGTTCGTCATCGTTGAGCTTGTTGTTCC 236434 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | |||||| || || | ||||| |||||||||| || || || | Sbjct 236435 AGTCGTGGAGATCTTTGGAAAGATCAATCTCTTCGGCAGTCCAGAAAGAAGCCTCGGCCT 236494 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 236495 TCTTGTACAT 236504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931502629981440