Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq2371 152 1e-31
seq2036 116 7e-21
>seq2371
Length=131994
Score = 152 bits (168), Expect = 1e-31
Identities = 490/750 (65%), Gaps = 29/750 (4%)
Strand=Plus/Minus
Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818
|| || ||||| | |||| || |||||| || || | || || || ||| ||
Sbjct 28174 ATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGG 28115
Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878
||| ||| |||||||| ||||| || || |||||||| |||||| | || ||
Sbjct 28114 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATA 28055
Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC----CCTCGGTCTTTTC 221934
|| ||| || | | ||| | | | |||||| | || | |||| | || |
Sbjct 28054 GAGTACCAAAGCTTTTGGGCCTTGA---TGCTCTTG-CGGCCCTTGCCCTCAGACTCGTA 27999
Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994
| | || || | ||| | | || | |||||||| | ||| ||| || ||||||
Sbjct 27998 TTTCTCG-TACAAAGCCT--CGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTC 27942
Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054
|| ||||||| |||||| ||| | || || | || ||||||||| || ||
Sbjct 27941 ATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 27882
Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114
||||| || || | || ||||| | || || ||||||| |||| ||| || |
Sbjct 27881 AATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 27822
Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174
|| || | ||||| |||| || |||||||| ||||| || |||| ||| | ||| ||
Sbjct 27821 GAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762
Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAA 222230
||||||||||| ||||| |||| || | | || || | |||||| | ||||
Sbjct 27761 AGGTCGCTTGTTACCACCTTGAT----CAACATATCGAGCGGTGTTGTTGAAAACCCGAA 27706
Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290
| | || || | ||||||||| ||||| || || |||||| ||||| ||| |
Sbjct 27705 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGC 27646
Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346
|| | ||| | |||| ||||||||||| |||| || || |||||||| ||
Sbjct 27645 ---GGATTCTGTGA-ACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAA 27590
Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406
|||| | |||||| ||| || || || ||||||||| | || | || || ||
Sbjct 27589 ATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAT 27530
Query 222407 GACGACATCTGAG-ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465
|| || | || | | ||||| | || || ||| || || || |||||| || ||
Sbjct 27529 GAAGAAAGTTGTGCCTGTGGTGTACCA-GCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA 27471
Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495
||| || ||||||| | ||| || ||
Sbjct 27470 GTACTTGCTGGACATCAAGTTGTAAGTTTC 27441
>seq2036
Length=314316
Score = 116 bits (128), Expect = 7e-21
Identities = 335/513 (65%), Gaps = 11/513 (2%)
Strand=Plus/Minus
Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872
|||| |||| |||||| ||||| | |||||| | || || | | |||| |||
Sbjct 236119 GCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTACCTTT 236061
Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932
| | || || || |||||||||||||| ||||| ||||| ||||| ||||| || ||
Sbjct 236060 GCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCA 236001
Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992
||||||||||| | ||| || || |||| | || || ||| ||||||||| |
Sbjct 236000 TCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTG 235941
Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052
||| | | || ||||||||||||| || || || ||||| |||| | | |||||||
Sbjct 235940 ATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CCACTTG 235884
Query 26053 CTCCACAAACCTTCTCAAGAGA-CCGTCTACAGTA-TCATCAAAGAGGCTGTGGAGATCG 26110
|| || |||| | | ||| | || | |||||| |||||||| ||||| |
Sbjct 235883 AAGCA-TCGCCCAAGCAAGGCAGCAGTCCA-AGCAGTCATCACCGAGGCTGTCGAGATTG 235826
Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170
|| | ||||| | |||||||| || || |
Sbjct 235825 AGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGA 235766
Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230
||| ||||||||||||| ||| ||||| | ||| || || || | |
Sbjct 235765 TGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGG 235706
Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289
| ||| || ||| ||||| |||||||| ||||| ||||| || | | || ||||||
Sbjct 235705 TTTACAAGGTTGCC-AACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACC 235647
Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
|||||||| || ||| | |||| || || |||
Sbjct 235646 AACTTCTTCGAGAAGCGTGTCGCTGATTACCAA 235614
Score = 84.2 bits (92), Expect = 4e-11
Identities = 175/260 (67%), Gaps = 7/260 (3%)
Strand=Plus/Minus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| ||| | |||||||||||||| | || |||||| |||||||||||||||||
Sbjct 236513 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAAGAGATTGATCTT 236454
Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591
|||| || | ||| |||| || |||| | | | ||||| | | || ||
Sbjct 236453 TCCAAAGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAACGCTACTTCATCT 236396
Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651
|||| | || ||||| || ||||| || || || || || ||||| || ||||
Sbjct 236395 CCCACGTCCTTGCTTTCTTCGCTGCCTCCGACGGAATTGTCAATGAGAACCTCCTCGAGC 236336
Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711
| |||| ||| ||||| || | |||||| | |||||||||||||| || |
Sbjct 236335 GCTTCAGCAGTGAAGTTCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 236276
Query 25712 TCGAAAATGTGCACTCTGAG 25731
| || || | |||||||||
Sbjct 236275 TGGAGAACATCCACTCTGAG 236256
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928814717039040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |