Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2371 152 1e-31 seq2036 116 7e-21 >seq2371 Length=131994 Score = 152 bits (168), Expect = 1e-31 Identities = 490/750 (65%), Gaps = 29/750 (4%) Strand=Plus/Minus Query 221759 ATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGA 221818 || || ||||| | |||| || |||||| || || | || || || ||| || Sbjct 28174 ATTTCAGTACACAAGTTGGAGCTTCGGATGGTACCAAGATTCTTTTGGTTGCTCTTTCGG 28115 Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 ||| ||| |||||||| ||||| || || |||||||| |||||| | || || Sbjct 28114 TTGCAAGCATCCTTGTAAAGCATGAAAGGGTTTCCAGTCTCGGTTTGAGCCTCGAGGATA 28055 Query 221879 TTGTCCCAGAGTTCTCTGGCGCTCACCGTCCTCTTGACTGCAC----CCTCGGTCTTTTC 221934 || ||| || | | ||| | | | |||||| | || | |||| | || | Sbjct 28054 GAGTACCAAAGCTTTTGGGCCTTGA---TGCTCTTG-CGGCCCTTGCCCTCAGACTCGTA 27999 Query 221935 ATACCCGGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | || || | ||| | | || | |||||||| | ||| ||| || |||||| Sbjct 27998 TTTCTCG-TACAAAGCCT--CGAATTCGTCACCGTAGACGTCGGCCAAACCAGGACACTC 27942 Query 221995 GGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGG 222054 || ||||||| |||||| ||| | || || | || ||||||||| || || Sbjct 27941 ATTAGGGCACATCAATGTCCAGTCAAGGTTCTTTTCAACACGCTTCATGAAGAGATCTGG 27882 Query 222055 GATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT 222114 ||||| || || | || ||||| | || || ||||||| |||| ||| || | Sbjct 27881 AATCCAGAGGGCGTAGAAAAGATCACGGGCACGAACCTCCTCCTTTCCGTGGTTCTTTCG 27822 Query 222115 CAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCC 222174 || || | ||||| |||| || |||||||| ||||| || |||| ||| | ||| || Sbjct 27821 GAGGTCGAGGAACTCGAAAACATCGGCGTGCCATGGCTCGAGGTAGATGGCGAAAGCACC 27762 Query 222175 GGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAG----CGTTGAAGATGCGAA 222230 ||||||||||| ||||| |||| || | | || || | |||||| | |||| Sbjct 27761 AGGTCGCTTGTTACCACCTTGAT----CAACATATCGAGCGGTGTTGTTGAAAACCCGAA 27706 Query 222231 GGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCC 222290 | | || || | ||||||||| ||||| || || |||||| ||||| ||| | Sbjct 27705 GCATAGGAACGATTCCGTTGGAGTTTCCGTTTGTACCGGCAATGTAAGCACCAGTGGCGC 27646 Query 222291 TCAGGTTACTGGCAGACAT----GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAG 222346 || | ||| | |||| ||||||||||| |||| || || |||||||| || Sbjct 27645 ---GGATTCTGTGA-ACATTGAGTCCGATACCACCTGCGTTCTTTGAAATCATGGCACAA 27590 Query 222347 CTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAA 222406 |||| | |||||| ||| || || || ||||||||| | || | || || || Sbjct 27589 ATCTTCAAAGTGTCGTAGATACCATCAATGCTGTCCTCCTTCATGTCGATGAGGAAGCAT 27530 Query 222407 GACGACATCTGAG-ATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAA 222465 || || | || | | ||||| | || || ||| || || || |||||| || || Sbjct 27529 GAAGAAAGTTGTGCCTGTGGTGTACCA-GCAGCAAAAAGTGTTGGTGAGGCGTGGGTGAA 27471 Query 222466 GTAGCCCCTAGACATCAGATCGTACGTCTC 222495 ||| || ||||||| | ||| || || Sbjct 27470 GTACTTGCTGGACATCAAGTTGTAAGTTTC 27441 >seq2036 Length=314316 Score = 116 bits (128), Expect = 7e-21 Identities = 335/513 (65%), Gaps = 11/513 (2%) Strand=Plus/Minus Query 25814 GCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTT 25872 |||| |||| |||||| ||||| | |||||| | || || | | |||| ||| Sbjct 236119 GCATTAAGAAGAAGGCTGATTGGGCTGTCCGATGGATCCA-AGACAAGGAGTCTACCTTT 236061 Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 | | || || || |||||||||||||| ||||| ||||| ||||| ||||| || || Sbjct 236060 GCTCAACGTCTTGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTTCTTTCGCA 236001 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||| | ||| || || |||| | || || ||| ||||||||| | Sbjct 236000 TCCATCTTCTGGTTGAAGAAGCGTGGCCTCATGGCTGGTCTTACCTTCTCCAACGAGTTG 235941 Query 25993 ATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTG 26052 ||| | | || ||||||||||||| || || || ||||| |||| | | ||||||| Sbjct 235940 ATCTCCCGTGATGAGGGTCTCCACACCGACTTCGCATGCCTTCTCTTCTC---CCACTTG 235884 Query 26053 CTCCACAAACCTTCTCAAGAGA-CCGTCTACAGTA-TCATCAAAGAGGCTGTGGAGATCG 26110 || || |||| | | ||| | || | |||||| |||||||| ||||| | Sbjct 235883 AAGCA-TCGCCCAAGCAAGGCAGCAGTCCA-AGCAGTCATCACCGAGGCTGTCGAGATTG 235826 Query 26111 AGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCA 26170 || | ||||| | |||||||| || || | Sbjct 235825 AGCAAGAGTTCTTGACTGAGGCTCTTCCTTGCGCGCTTCTCGGCATGAATGCCAACCTGA 235766 Query 26171 TGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGAC 26230 ||| ||||||||||||| ||| ||||| | ||| || || || | | Sbjct 235765 TGAAGCAATACATTGAGTTTGTCGCCGATCGTCTTCTCCTTTCTCTCGGCAATGAGAAGG 235706 Query 26231 TCTAC-AGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACC 26289 | ||| || ||| ||||| |||||||| ||||| ||||| || | | || |||||| Sbjct 235705 TTTACAAGGTTGCC-AACCCATTCGACTTCATGGAGAACATCTCTCTCGCCGGAAAGACC 235647 Query 26290 AACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 |||||||| || ||| | |||| || || ||| Sbjct 235646 AACTTCTTCGAGAAGCGTGTCGCTGATTACCAA 235614 Score = 84.2 bits (92), Expect = 4e-11 Identities = 175/260 (67%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | || |||||| ||||||||||||||||| Sbjct 236513 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACTGCCGAAGAGATTGATCTT 236454 Query 25537 GCCAAGGACATGGACGGCTGGTAC-----GCTCTATCCAAAGACGAGCAGCATTTTCTCA 25591 |||| || | ||| |||| || |||| | | | ||||| | | || || Sbjct 236453 TCCAAAGATCTCCACGACTGGAACAACAAGCTCAA--CGATGACGAACGCTACTTCATCT 236396 Query 25592 AGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGA 25651 |||| | || ||||| || ||||| || || || || || ||||| || |||| Sbjct 236395 CCCACGTCCTTGCTTTCTTCGCTGCCTCCGACGGAATTGTCAATGAGAACCTCCTCGAGC 236336 Query 25652 GATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCA 25711 | |||| ||| ||||| || | |||||| | |||||||||||||| || | Sbjct 236335 GCTTCAGCAGTGAAGTTCAAATCCCAGAGGCCCGATTCTTCTACGGTTTCCAAATCATGA 236276 Query 25712 TCGAAAATGTGCACTCTGAG 25731 | || || | ||||||||| Sbjct 236275 TGGAGAACATCCACTCTGAG 236256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928814717039040