Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19] 2,591 sequences; 63,226,382 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq491 114 8e-20 seq1113 100 2e-15 seq1401 91.5 1e-12 seq1 86.0 4e-11 >seq491 Length=100261 Score = 114 bits (126), Expect = 8e-20 Identities = 387/596 (65%), Gaps = 10/596 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| || ||||| ||| | ||||| || ||| ||||||| | ||| | ||| | Sbjct 75291 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATTTACCGTGATGATCG 75232 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 | | || || || || || ||||| || || |||| || || || | ||| | || || Sbjct 75231 AATTGAGATTATCGCAAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCAC 75172 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || || || | ||| || |||||||| || || | |||| || || || | || Sbjct 75171 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAA 75112 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565 || | || || || || | |||||||| || || || | || ||| || || Sbjct 75111 CACAGTCTTCGACGCAAAGCGTTTGATTGGACGAAAGTTCGCAGA--CCAGGAGGTGCAG 75054 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623 |||||||| || | ||||| | || | | |||||| || ||| | || Sbjct 75053 GCTGATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGAG 74994 Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | || | || || | || ||||| |||| ||| |||| ||||| ||| | | Sbjct 74993 ATTGAGTTCAAG--GGCGAGAAGAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCT 74936 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | | ||| |||| | | || || ||| | || ||||| | || | | || || Sbjct 74935 TGGTCAAGATGAGAGAGACTGCCGAGGCC-TACCTTGGTGGAACCGTCAACAACGCCGTC 74877 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 | || || ||||| || || | ||||| ||||||||||| || || ||||| || Sbjct 74876 GTCACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTG 74817 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 || || ||||| || || | ||||| || || || || || |||||||| ||||||| Sbjct 74816 ATCGCTGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCAGCCGCCATTGCTTAC 74757 Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918 ||||| || ||||| ||| || ||| ||| | ||||||||| ||| || Sbjct 74756 GGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 74701 >seq1113 Length=83002 Score = 100 bits (110), Expect = 2e-15 Identities = 124/170 (73%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | ||||| | ||||||||||||||||||||| || || | ||| ||| Sbjct 57016 TTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGT 57075 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || || |||||||| |||||||| || ||||| |||||| || ||||| || Sbjct 57076 TGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCG 57135 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | || ||||| || || ||||| ||||| ||||| ||||| Sbjct 57136 CTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185 >seq1401 Length=76520 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805 || || ||||| || || || ||||| ||||||||||| || || ||||| || |||| Sbjct 32214 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 32155 Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865 || |||||||| ||| | | | | || || ||||| || || || ||||| |||||| Sbjct 32154 GCCGGTCTTAACGTTCTGAGAGTAGTCAACGAGCCAACTGCTGCTGCCCTTGCCTATGGT 32095 Query 474866 CTTGATAAGAATTCTGACAA 474885 ||||| ||| || ||||| Sbjct 32094 CTTGAGAAGGATGAGGACAA 32075 >seq1 Length=509191 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 ||||| ||||||| |||||||||| | || ||||| || ||| |||| |||| || Sbjct 354957 ATCCAGGTCTTTGAGGGTGAAAGAACCATGACAAAAGACAACAACCAACTCGGAAAATTC 355016 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | ||| ||||| || ||||| || |||||||||||||||| || || |||| || Sbjct 355017 GAGCTTACTGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATCGAGGTCTCTTTCGAG 355076 Query 476141 ATTGATGCAAATGGTAT 476157 |||| || || || || Sbjct 355077 CTTGACGCCAACGGAAT 355093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268068059438468