Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hymenoscyphus_20scutula_20[genbank_20GCA_5F001399465.1_202015-10-19]
2,591 sequences; 63,226,382 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq491 114 8e-20
seq1113 100 2e-15
seq1401 91.5 1e-12
seq1 86.0 4e-11
>seq491
Length=100261
Score = 114 bits (126), Expect = 8e-20
Identities = 387/596 (65%), Gaps = 10/596 (2%)
Strand=Plus/Minus
Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387
||| || ||||| ||| | ||||| || ||| ||||||| | ||| | ||| |
Sbjct 75291 TGCCATAGGTATCGATCTTGGAACCACCTACTCCTGTGTAGGTATTTACCGTGATGATCG 75232
Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447
| | || || || || || ||||| || || |||| || || || | ||| | || ||
Sbjct 75231 AATTGAGATTATCGCAAACGACCAGGGAAACCGAACTACCCCTTCCTTCGTTGCCTTCAC 75172
Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507
|| || || | ||| || |||||||| || || | |||| || || || | ||
Sbjct 75171 AGATACCGAGCGTCTGATCGGAGATGCCGCAAAGAACCAAGTCGCCATGAACCCCGCCAA 75112
Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACT--GTCCAA 474565
|| | || || || || | |||||||| || || || | || ||| || ||
Sbjct 75111 CACAGTCTTCGACGCAAAGCGTTTGATTGGACGAAAGTTCGCAGA--CCAGGAGGTGCAG 75054
Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AG 474623
|||||||| || | ||||| | || | | |||||| || ||| | ||
Sbjct 75053 GCTGATATGAAGCACTTCCCTTTCACCGTCCTCGACCGTGGTGGAAAGCCAGTCGTCGAG 74994
Query 474624 AAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683
| | | || | || || | || ||||| |||| ||| |||| ||||| ||| | |
Sbjct 74993 ATTGAGTTCAAG--GGCGAGAAGAAGCAATTCACACCAGAAGAAATCTCTTCCATGATCT 74936
Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742
| | ||| |||| | | || || ||| | || ||||| | || | | || ||
Sbjct 74935 TGGTCAAGATGAGAGAGACTGCCGAGGCC-TACCTTGGTGGAACCGTCAACAACGCCGTC 74877
Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802
| || || ||||| || || | ||||| ||||||||||| || || ||||| ||
Sbjct 74876 GTCACAGTCCCAGCCTACTTCACCGATTCACAACGTCAAGCCACCAAGGATGCCGGTCTG 74817
Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862
|| || ||||| || || | ||||| || || || || || |||||||| |||||||
Sbjct 74816 ATCGCTGGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCAGCCGCCATTGCTTAC 74757
Query 474863 GGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGG 474918
||||| || ||||| ||| || ||| ||| | ||||||||| ||| ||
Sbjct 74756 GGTCTCGACAAGAAGGTTGAGGGTGAGCGAAACGTTCTCATCTTTGATCTTGGTGG 74701
>seq1113
Length=83002
Score = 100 bits (110), Expect = 2e-15
Identities = 124/170 (73%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653
|||||||| | ||||| | ||||||||||||||||||||| || || | ||| |||
Sbjct 57016 TTATAATCTGACAGAGTGCGTCCATCTTCAAGTTGCTTTCCAGCGAAGATCAAACGCTGT 57075
Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713
|| || || |||||||| |||||||| || ||||| |||||| || ||||| ||
Sbjct 57076 TGGTCCGGTGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCGATAGTGTCG 57135
Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763
| | || ||||| || || ||||| ||||| ||||| |||||
Sbjct 57136 CTAGATTCGACCTCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAA 57185
>seq1401
Length=76520
Score = 91.5 bits (100), Expect = 1e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 474746 ACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATT 474805
|| || ||||| || || || ||||| ||||||||||| || || ||||| || ||||
Sbjct 32214 ACAGTCCCAGCTTACTTCAACGATTCACAACGTCAAGCCACCAAGGATGCTGGTCAAATT 32155
Query 474806 GCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGT 474865
|| |||||||| ||| | | | | || || ||||| || || || ||||| ||||||
Sbjct 32154 GCCGGTCTTAACGTTCTGAGAGTAGTCAACGAGCCAACTGCTGCTGCCCTTGCCTATGGT 32095
Query 474866 CTTGATAAGAATTCTGACAA 474885
||||| ||| || |||||
Sbjct 32094 CTTGAGAAGGATGAGGACAA 32075
>seq1
Length=509191
Score = 86.0 bits (94), Expect = 4e-11
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 476021 ATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080
||||| ||||||| |||||||||| | || ||||| || ||| |||| |||| ||
Sbjct 354957 ATCCAGGTCTTTGAGGGTGAAAGAACCATGACAAAAGACAACAACCAACTCGGAAAATTC 355016
Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140
| ||| ||||| || ||||| || |||||||||||||||| || || |||| ||
Sbjct 355017 GAGCTTACTGGTATCCCACCTGCGCCACGAGGAGTTCCTCAAATCGAGGTCTCTTTCGAG 355076
Query 476141 ATTGATGCAAATGGTAT 476157
|||| || || || ||
Sbjct 355077 CTTGACGCCAACGGAAT 355093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268068059438468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |